OMP ST:1026 ! Escherichia coli K-12 JW3595
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW3595 |
|---|---|
| Synonyms |
JW3595-2 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 rfaF732(del)::kan |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:937 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:1141 |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:882 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:33776 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27518 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2955) Azithromycin |
| ||
|
OMP_AN:33777 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27571 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) |
| ||
|
OMP_AN:33778 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27535 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate |
| ||
|
OMP_AN:33779 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27511 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28918) (-)-Epinephrine |
| ||
|
OMP_AN:33780 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27520 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42355) Erythromycin |
| ||
|
OMP_AN:33781 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27515 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:126963539) Fusidic acid sodium salt |
| ||
|
OMP_AN:33782 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27537 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:51208) Mecillinam |
| ||
|
OMP_AN:33783 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27513 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8055) Phenazine methosulfate (PMS) |
| ||
|
OMP_AN:33784 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27573 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8431) Procaine hydrochloride |
| ||
|
OMP_AN:33785 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27553 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8642) Puromycin dihydrochloride |
| ||
|
OMP_AN:33786 |
OMP:0006040 |
decreased resistance to quinolone |
Relative to: OMP_AN:27543 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9287) Streptonigrin |
| ||
|
OMP_AN:33787 |
OMP:0006058 |
increased resistance to aminoglycoside |
Relative to: OMP_AN:27529 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28864) Tobramycin |
| ||
|
OMP_AN:33788 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27588 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:164200) Triclosan/Irgasan |
| ||
|
OMP_AN:33789 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27568 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53188) (±)-Verapamil hydrochloride |
| ||
|
OMP_AN:33790 |
OMP:0006041 |
increased resistance to quinolone |
Relative to: OMP_AN:27539 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate |
| ||
|
OMP_AN:33791 |
OMP:0006040 |
decreased resistance to quinolone |
Relative to: OMP_AN:27541 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:3864541) Nalidixic acid sodium salt |
| ||
|
OMP_AN:33792 |
OMP:0007010 |
decreased population growth at alkaline pH |
Relative to: OMP_AN:27623 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: pH:8.0? |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
|
OMP_AN:33793 |
OMP:0007008 |
decreased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES |
| ||
|
OMP_AN:33794 |
OMP:0007009 |
increased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +rfaF732(del) Condition differences: pH:6.0? |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
|
OMP_AN:33795 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27591 Genotype differences: +lacZ4787(del)( +rfaF732(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331) |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
e
o
- OMP:0005324 ! altered cell motility by swimming
- OMP:0006036 ! decreased resistance to macrolide
- OMP:0006040 ! decreased resistance to quinolone
- OMP:0006041 ! increased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0006058 ! increased resistance to aminoglycoside
- OMP:0007008 ! decreased growth at acidic pH
- OMP:0007009 ! increased growth at acidic pH
- OMP:0007010 ! decreased growth at alkaline pH
- OMP:0007092 ! decreased motility by swarming
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007878 ! increased resistance to an antimicrobial agent
- OMP:0007879 ! decreased resistance to an antimicrobial agent
