OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
Contents
Strain Summary
Strain Name |
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156. |
---|---|
Synonyms | |
Taxon Information |
|
Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.
Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.
The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins ([2]). See the original paper for additional details about the strains used in the screen.
Phenotype Annotation
Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:27500 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:45924) Trimethoprim |
0.1, 0.2, 0.3, 0.4 ug/ml | ||
OMP_AN:27501 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:247956) Dibucaine |
0.4, 0.8, 1.2 mM | ||
OMP_AN:27502 |
OMP:0007373 |
resistant to alkylating agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:25255) methyl methanesulfonate (MMS) |
0.05% | ||
OMP_AN:27503 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:71415) Nitrofurantoin |
0.1, 0.5, 1, 1.5, 2 ug/ml | ||
OMP_AN:27504 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31924) Novobiocin sodium salt |
4, 6, 8, 10, 12, 30 ug/ml | ||
OMP_AN:27505 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:165528) Methotrexate hydrate |
1, 25 ug/ml | ||
OMP_AN:27506 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31522) Doxorubicin hydrochloride |
1, 10 ug/ml | ||
OMP_AN:27507 |
OMP:0007909 |
resistant to a chelator |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758) EDTA disodium salt dihydrate |
0.1, 0.5, 1 mM | ||
OMP_AN:27508 |
OMP:0007909 |
resistant to a chelator |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:30740) EGTA |
0.1, 0.5, 1, 2 mM | ||
OMP_AN:27509 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride |
20, 50, 100 ug/ml | ||
OMP_AN:27510 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:27504) Mitomycin C |
0.1 ug/ml | ||
OMP_AN:27511 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28918) (-)-Epinephrine |
50, 250, 1000 uM | ||
OMP_AN:27512 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:44423) Hydroxyurea |
1, 5, 10 mM | ||
OMP_AN:27513 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8055) Phenazine methosulfate (PMS) |
0.02, 0.05, 0.1 mM | ||
OMP_AN:27514 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3649) Chlorpromazine hydrochloride |
3, 6, 12, 24 uM | ||
OMP_AN:27515 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:126963539) Fusidic acid sodium salt |
1, 5, 20, 50 ug/ml | ||
OMP_AN:27516 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:445629) Thiolactomycin |
1, 5, 50 uM | ||
OMP_AN:27517 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16760591) Nigericin sodium salt |
0.1, 1, 5 uM | ||
OMP_AN:27518 |
OMP:0006039 |
resistant to macrolide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2955) Azithromycin |
0.02, 0.1, 1 ug/ml | ||
OMP_AN:27519 |
OMP:0006039 |
resistant to macrolide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3732) Clarithromycin |
0.1, 1, 5, 10 ug/ml | ||
OMP_AN:27520 |
OMP:0006039 |
resistant to macrolide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42355) Erythromycin |
0.1, 1, 5, 10 ug/ml | ||
OMP_AN:27521 |
OMP:0006039 |
resistant to macrolide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:6419898) Spiramycin |
1, 5, 20 ug/ml | ||
OMP_AN:27522 |
OMP:0006065 |
resistant to tetracycline |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:34730) Doxycycline hyclate |
0.25, 0.5, 0.75, 1 ug/ml | ||
OMP_AN:27523 |
OMP:0006065 |
resistant to tetracycline |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:50697) Minocycline hydrochloride |
0.2, 0.5, 1 ug/ml | ||
OMP_AN:27524 |
OMP:0006065 |
resistant to tetracycline |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:35006) Tetracycline hydrochloride |
0.25, 0.5, 0.75, 1 ug/ml | ||
OMP_AN:27525 |
OMP:0006060 |
resistant to aminoglycoside |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate) |
0.05, 0.1, 0.2 ug/ml | ||
OMP_AN:27526 |
OMP:0006060 |
resistant to aminoglycoside |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:5312) Gentamicin sulfate salt |
0.05, 0.1 ug/ml | ||
OMP_AN:27527 |
OMP:0006060 |
resistant to aminoglycoside |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate |
4, 6 ug/ml | ||
OMP_AN:27528 |
OMP:0006060 |
resistant to aminoglycoside |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32158) Streptomycin sulfate |
0.05 ug/ml | ||
OMP_AN:27529 |
OMP:0006060 |
resistant to aminoglycoside |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28864) Tobramycin |
0.05, 0.1, 0.2, 0.4 ug/ml | ||
OMP_AN:27530 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2676) Amoxicillin |
0.25, 0.5, 1, 1.5 ug/ml | ||
OMP_AN:27531 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28971) Ampicillin |
1, 2, 4, 8 ug/ml | ||
OMP_AN:27532 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:161680) Aztreonam |
0.02, 0.04 ug/ml | ||
OMP_AN:27533 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:34609) Carbenicillin disodium |
0.5, 1, 1.5 ug/ml | ||
OMP_AN:27534 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3501) Cefoxitin sodium hydrate |
0.25, 0.5, 0.75, 1 ug/ml | ||
OMP_AN:27535 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate |
6, 12, 18, 24 ug/ml | ||
OMP_AN:27536 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3509) Ceftazidime hydrate |
0.025, 0.05, 0.075 ug/ml | ||
OMP_AN:27537 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:51208) Mecillinam |
0.03, 0.06, 0.09, 0.12 ug/ml | ||
OMP_AN:27538 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:52134) Oxacillin sodium salt |
0.5, 5, 40 ug/ml | ||
OMP_AN:27539 |
OMP:0006043 |
resistant to quinolone |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate |
0.004, 0.006, 0.008 ug/ml | ||
OMP_AN:27540 |
OMP:0006043 |
resistant to quinolone |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:63598) Levofloxacin |
0.002 ug/ml | ||
OMP_AN:27541 |
OMP:0006043 |
resistant to quinolone |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:3864541) Nalidixic acid sodium salt |
0.5, 1, 1.5, 2 ug/ml | ||
OMP_AN:27542 |
OMP:0006043 |
resistant to quinolone |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:100246) Norfloxacin |
0.01, 0.02, 0.04 ug/ml | ||
OMP_AN:27543 |
OMP:0006043 |
resistant to quinolone |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9287) Streptonigrin |
0.1, 0.2, 0.5 ug/ml | ||
OMP_AN:27544 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17698) Chloramphenicol |
0.5, 1, 1.5, 2 ug/ml | ||
OMP_AN:27545 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:6030) Isoniazid |
0.2, 1, 1.5 mM | ||
OMP_AN:27546 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8653) Pyocyanin |
0.2, 1, 10 ug/ml | ||
OMP_AN:27547 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:16240) Hydrogen peroxide |
0.1, 0.5, 1, 2 mM | ||
OMP_AN:27548 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:171741) Cerulenin |
1, 2, 4, 6 ug/ml | ||
OMP_AN:27549 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:134107 CID:11546620) CHIR-090 |
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml | ||
OMP_AN:27550 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:4883) Ethidium Bromide |
2, 10, 50 ug/ml | ||
OMP_AN:27551 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28077) Rifampicin |
1, 2 ug/ml | ||
OMP_AN:27552 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:10110) Azidothymidine |
0.5, 1, 2.5 ng/ml | ||
OMP_AN:27553 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8642) Puromycin dihydrochloride |
1, 5, 25 ug/ml | ||
OMP_AN:27554 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:29699) Tunicamycin |
1, 3, 7.5 ug/ml | ||
OMP_AN:27555 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:6093162) Fosfomycin disodium salt |
1 ug/ml | ||
OMP_AN:27556 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:60584) Bicyclomycin |
1, 10 ug/ml | ||
OMP_AN:27557 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:2830968) A22 |
0.5, 2, 5, 15 ug/ml | ||
OMP_AN:27558 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:40009) D-Cycloserine |
16 ug/ml | ||
OMP_AN:27559 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:27666 CID:457193) Actinomycin D |
2.5, 5, 10, 15 ug/ml | ||
OMP_AN:27560 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16219032) Bacitracin Zinc Sulfate |
100, 200, 300 ug/ml | ||
OMP_AN:27561 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:34582) Bleomycin sulfate |
0.1, 0.5, 1, 2 ug/ml | ||
OMP_AN:27562 |
OMP:0007171 |
resistant to antimicrobial peptide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16130488) Cecropin B |
0.1, 0.3 ug/ml | ||
OMP_AN:27563 |
OMP:0007171 |
resistant to antimicrobial peptide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (UniProtKB:P33046) Indolicidin |
0.1 ug/ml | ||
OMP_AN:27564 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75044) Phleomycin |
0.2, 0.5, 1 ug/ml | ||
OMP_AN:27565 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8310) Polymyxin B sulfate |
1, 2, 4, 6 ug/ml | ||
OMP_AN:27566 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9932) Vancomycin HCl hydrate |
10, 20, 50 ug/ml | ||
OMP_AN:27567 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28177) Theophylline anhydrous |
10, 100 ug/ml | ||
OMP_AN:27568 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53188) (±)-Verapamil hydrochloride |
0.1, 0.5, 1 mM | ||
OMP_AN:27569 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:16236) EtOH |
2, 4, 6 % | ||
OMP_AN:27570 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:51240) Propidium iodide |
1, 20, 50 ug/ml | ||
OMP_AN:27571 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) |
0.1, 0.5, 2 ug/ml | ||
OMP_AN:27572 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG) |
5, 20, 50 uM | ||
OMP_AN:27573 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8431) Procaine hydrochloride |
1, 5, 10, 30 mM | ||
OMP_AN:27574 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28786) Paraquat dichloride |
0.2, 1, 5, 10, 18 uM | ||
OMP_AN:27575 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride) |
2, 10 ug/ml | ||
OMP_AN:27576 |
OMP:0007829 |
resistant to sulfonamide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9331) Sulfamethizole |
100, 200, 300 ug/ml | ||
OMP_AN:27577 |
OMP:0007829 |
resistant to sulfonamide |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32164) Sulfamonomethoxine |
50, 100 ug/ml | ||
OMP_AN:27578 |
OMP:0007884 |
resistant to a metal |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate |
0.1, 0.5 mM (LB) | ||
OMP_AN:27579 |
OMP:0007884 |
resistant to a metal |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate |
1, 2, 4 mM (LB) | ||
OMP_AN:27580 |
OMP:0007884 |
resistant to a metal |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate |
0.1, 1 mM (LB) | ||
OMP_AN:27581 |
OMP:0007892 |
resistant to a surfactant |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3020) Benzalkonium chloride |
1, 10, 25 ug/ml | ||
OMP_AN:27582 |
OMP:0007892 |
resistant to a surfactant |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8984) SDS |
0.5, 1, 2, 3, 4 % | ||
OMP_AN:27583 |
OMP:0007892 |
resistant to a surfactant |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9750) Triton X-100 |
0.01, 0.03, 0.2 % | ||
OMP_AN:27584 |
OMP:0007899 |
resistant to bile acids |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23687511) Taurocholic acid sodium salt hydrate |
0.1, 0.5, 1 % | ||
OMP_AN:27585 |
OMP:0007899 |
resistant to bile acids |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23679061) Cholate sodium hydrate |
0.1, 0.5, 1, 2 % | ||
OMP_AN:27586 |
OMP:0007899 |
resistant to bile acids |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9177) Deoxycholate sodium |
0.1, 0.5, 2 % | ||
OMP_AN:27587 |
OMP:0007899 |
resistant to bile acids |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177) |
0.1, 0.5, 1, 2 % | ||
OMP_AN:27588 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:164200) Triclosan/Irgasan |
0.05 ug/ml | ||
OMP_AN:27589 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam |
6 + 0.03 ug/ml | ||
OMP_AN:27590 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170) |
0.05, 0.2 ug/ml (in 50 mg/ml G6P) | ||
OMP_AN:27591 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331) |
0.1 + 50 ug/ml | ||
OMP_AN:27592 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28) |
50 ug/ml | ||
OMP_AN:27593 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:18357) (-)-Norepinephrine |
100, 1000 uM | ||
OMP_AN:27594 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758) |
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM | ||
OMP_AN:27595 |
OMP:0007517 |
presence of population growth in high osmolarity |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26710) NaCl |
150, 300, 450, 600 mM | ||
OMP_AN:27596 |
OMP:0006047 |
resistant to beta-lactam |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3478) Cefaclor |
1, 2, 3 ug/ml | ||
OMP_AN:27597 |
OMP:0007247 |
resistant to a chemical |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:556075) Radicicol |
1, 5, 10 uM | ||
OMP_AN:27598 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS) |
1mM (MOPS; normal 100uM) | ||
OMP_AN:27599 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS) |
2uM (MOPS; normal 100uM) | ||
OMP_AN:27600 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl (MOPS) |
9.5mm | ||
OMP_AN:27601 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9) |
0.6% | ||
OMP_AN:27602 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9) |
0.2% | ||
OMP_AN:27603 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous (M9) |
0.2% | ||
OMP_AN:27604 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol (M9) |
0.4% | ||
OMP_AN:27605 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate (M9) |
0.1% | ||
OMP_AN:27606 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9) |
0.15% | ||
OMP_AN:27607 |
OMP:0007018 |
does not require growth factor(s) |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid (M9) |
0.3% | ||
OMP_AN:27608 |
OMP:0007884 |
resistant to a metal |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS) |
1mM (MOPS; normal 100uM) | ||
OMP_AN:27609 |
OMP:0007962 |
presence of cell population growth during nutrient limitation |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS) |
2uM (MOPS; normal 100uM) | ||
OMP_AN:27610 |
OMP:0007306 |
presence of inorganic nitrogen source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl (MOPS) |
9.5mm | ||
OMP_AN:27611 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9) |
0.6% | ||
OMP_AN:27612 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9) |
0.2% | ||
OMP_AN:27613 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous (M9) |
0.2% | ||
OMP_AN:27614 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol (M9) |
0.4% | ||
OMP_AN:27615 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate (M9) |
0.1% | ||
OMP_AN:27616 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9) |
0.15% | ||
OMP_AN:27617 |
OMP:0006024 |
presence of organic carbon source utilization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid (M9) |
0.3% | ||
OMP_AN:27618 |
OMP:0005190 |
presence of anaerobic growth |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
||||
OMP_AN:27619 |
OMP:0007282 |
presence of UV radiation resistance |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
6, 12, 18, 24 sec | |||
OMP_AN:27620 |
OMP:0007956 |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
OMP:0007956 is presence of population growth at low temperature 16C, 18C, or 20C | ||||
OMP_AN:27621 |
OMP:0007950 |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
40, 42, 43.5, or 45 C OMP:0007950 presence of population growth at high temperature | ||||
OMP_AN:27622 |
OMP:0007945 |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES |
pH 4, 4.5, 5.0, or 6.0 OMP:0007945 presence of population growth at acidic pH | |||
OMP_AN:27623 |
OMP:0007771 |
presence of population growth at alkaline pH |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:24900259) TAPS |
pH 8, 9, 9.5, or 10 | ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.000 1.001 1.002 1.003 1.004 1.005 1.006 1.007 1.008 1.009 1.010 1.011 1.012 1.013 1.014 1.015 1.016 1.017 1.018 1.019 1.020 1.021 1.022 1.023 1.024 1.025 1.026 1.027 1.028 1.029 1.030 1.031 1.032 1.033 1.034 1.035 1.036 1.037 1.038 1.039 1.040 1.041 1.042 1.043 1.044 1.045 1.046 1.047 1.048 1.049 1.050 1.051 1.052 1.053 1.054 1.055 1.056 1.057 1.058 1.059 1.060 1.061 1.062 1.063 1.064 1.065 1.066 1.067 1.068 1.069 1.070 1.071 1.072 1.073 1.074 1.075 1.076 1.077 1.078 1.079 1.080 1.081 1.082 1.083 1.084 1.085 1.086 1.087 1.088 1.089 1.090 1.091 1.092 1.093 1.094 1.095 1.096 1.097 1.098 1.099 1.100 1.101 1.102 1.103 1.104 1.105 1.106 1.107 1.108 1.109 1.110 1.111 1.112 1.113 1.114 1.115 1.116 1.117 1.118 1.119 1.120 1.121 1.122 1.123 1.124 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
- ↑ Hobbs, EC et al. (2010) Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. J. Bacteriol. 192 59-67 PubMed OMPwiki page
o
- OMP:0005190 ! presence of anaerobic growth
- OMP:0006024 ! presence of organic carbon source utilization
- OMP:0006039 ! resistant to macrolide
- OMP:0006043 ! resistant to quinolone
- OMP:0006047 ! resistant to beta-lactam
- OMP:0006060 ! resistant to aminoglycoside
- OMP:0006065 ! resistant to tetracycline
- OMP:0007018 ! does not require growth factor(s)
- OMP:0007171 ! resistant to antimicrobial peptide
- OMP:0007247 ! resistant to a chemical
- OMP:0007282 ! presence of UV radiation resistance
- OMP:0007306 ! presence of inorganic nitrogen source utilization
- OMP:0007373 ! resistant to alkylating agent
- OMP:0007517 ! presence of population growth in high osmolarity
- OMP:0007771 ! presence of population growth at alkaline pH
- OMP:0007829 ! resistant to sulfonamide
- OMP:0007876 ! resistant to an antimicrobial agent
- OMP:0007884 ! resistant to a metal
- OMP:0007892 ! resistant to a surfactant
- OMP:0007899 ! resistant to bile acids
- OMP:0007909 ! resistant to a chelator