OMP ST:71545 ! Escherichia coli K-12 JW0512
Strain Summary
| Strain Name |
Escherichia coli K-12 JW0512 |
|---|---|
| Synonyms |
JW0512-1 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 purE736(del)::FRT-kan-FRT |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:28624 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:28625 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:28626 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177) |
| ||
|
OMP_AN:28627 |
OMP:0007902 |
increased resistance to bile acids |
Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177) |
| ||
|
OMP_AN:28628 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27519 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3732) Clarithromycin |
| ||
|
OMP_AN:28629 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9177) Deoxycholate sodium |
| ||
|
OMP_AN:28630 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:28631 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:28632 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:28633 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:28634 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:28635 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:28636 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:28637 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:28638 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:28639 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:28640 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:28641 |
OMP:0007032 |
decreased utilization of inorganic nitrogen source |
Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:28642 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27503 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:71415) Nitrofurantoin |
| ||
|
OMP_AN:28643 |
OMP:0007896 |
decreased resistance to a surfactant |
Relative to: OMP_AN:27582 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8984) SDS |
| ||
|
OMP_AN:28644 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27607 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:28645 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27617 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:28646 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27598 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:28647 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27608 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:28648 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:28649 |
OMP:0007937 |
decreased resistance to nutrient limitation |
Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:28650 |
OMP:0007521 |
decreased population growth in high osmolarity |
Relative to: OMP_AN:27595 Genotype differences: +lacZ4787(del)( +purE736(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26710) NaCl |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed
o
- OMP:0006036 ! decreased resistance to macrolide
- OMP:0007032 ! decreased utilization of inorganic nitrogen source
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007075 ! decreased growth factor requirement
- OMP:0007521 ! decreased population growth in high osmolarity
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
- OMP:0007896 ! decreased resistance to a surfactant
- OMP:0007902 ! increased resistance to bile acids
- OMP:0007903 ! decreased resistance to bile acids
- OMP:0007937 ! decreased resistance to nutrient limitation
