OMP ST:71044 ! Escherichia coli K-12 BW25113 cydA::SPA-kan

Strain Summary

Strain Name	Escherichia coli K-12 BW25113 cydA::SPA-kan
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cydA::SPA-kan
Strain Reference	PMID:21185072
Strain availability
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:37193		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27594 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)	chemical concentration= 0.5%/0.5mM %/0.5mM normalized fitness= -5
OMP_AN:37194		OMP:0007954	decreased population growth at high temperature	Relative to: OMP_AN:27621 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: temperature:40C medium37C medium	temperature:40C medium:LB agar medium:High temperature	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072		chemical concentration= 40 C normalized fitness= -6.19
OMP_AN:37195		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27514 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Chlorpromazine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3649) Chlorpromazine hydrochloride	chemical concentration= 6 uM normalized fitness= -7.33
OMP_AN:37196		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27501 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Dibucaine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:247956) Dibucaine	chemical concentration= 1.2 mM normalized fitness= -4.49
OMP_AN:37197		OMP:0007912	decreased resistance to a chelator	Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:EDTA disodium salt dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758) EDTA disodium salt dihydrate	chemical concentration= 1 mM normalized fitness= -4.43
OMP_AN:37198		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27550 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Ethidium Bromide	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:4883) Ethidium Bromide	chemical concentration= 10 ug/ml normalized fitness= -4.9
OMP_AN:37199		OMP:0007173	decreased resistance to host defense peptides	Relative to: OMP_AN:27563 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Indolicidin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (UniProtKB:P33046) Indolicidin	chemical concentration= 0.1 ug/ml normalized fitness= -5.22
OMP_AN:37200		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27593 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:(-)-Norepinephrine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:18357) (-)-Norepinephrine	chemical concentration= 100 uM normalized fitness= -4.18
OMP_AN:37201		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27570 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Propidium iodide	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:51240) Propidium iodide	chemical concentration= 20 ug/ml normalized fitness= -7.37
OMP_AN:37202		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27574 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Paraquat dichloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:28786) Paraquat dichloride	chemical concentration= 18 uM normalized fitness= 3.63
OMP_AN:37203		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27553 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Puromycin dihydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:8642) Puromycin dihydrochloride	chemical concentration= 25 ug/ml normalized fitness= 4.04
OMP_AN:37204		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27568 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:(±)-Verapamil hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:53188) (±)-Verapamil hydrochloride	chemical concentration= 1 mM normalized fitness= -3.66
OMP_AN:37205		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27532 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Aztreonam	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:161680) Aztreonam	chemical concentration= 0.02 ug/ml normalized fitness= -6.4
OMP_AN:37206		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27589 Genotype differences: +lacZ4787(del)( +cydA -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefsulodin + Mecillinam	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam	chemical concentration= 6 + 0.03 ug/ml normalized fitness= -7.76
edit table

References

See Help:References for how to manage references in OMPwiki.