Difference between revisions of "OMP ST:928 ! Escherichia coli K-12 YK2008"
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!align=left align='left' bgcolor='#CCCCFF' |Genotype | !align=left align='left' bgcolor='#CCCCFF' |Genotype | ||
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| − | F- | + | F- lambda- e14-(?) Rac-0(?) uvrC34 hisG4(Oc) rfbC1 mgl-51 rpsL31(strR) kdgK51 xylA5 mtl-1 argE3(Oc) thiE1 thyA galU51 pyrC46 nalA flgE2008(Am) |
| − | lambda- | ||
| − | |||
| − | |||
| − | thyA | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | pyrC46 | ||
| − | nalA | ||
| − | flgE2008(Am) | ||
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference | ||
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==Notes== | ==Notes== | ||
| − | + | YK2008 was isolated by selecting for derivatives of YK102 that are resistant to phage Chi and then screening for loss of motility. Note that in the paper<ref name='PMID:338588'/>, the flgE gene is referred to by the older name, flaK. | |
| + | |||
| + | For the flgE2008(Am) mutation, the allele number was added by an OMP curator following the pattern seen in papers from the Simon lab of naming alleles based on strain numbers. [[User:Siegele|Siegele]] ([[User talk:Siegele|talk]]) 13:44, 18 July 2016 (CDT) | ||
==Phenotype Annotation== | ==Phenotype Annotation== | ||
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| − | !|Annotation ID!! | + | !|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes |
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OMP:0007000 | OMP:0007000 | ||
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| − | abolished | + | abolished motility |
| | | | ||
Relative to: OMP_AN:691 | Relative to: OMP_AN:691 | ||
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+flgE2008(Am) | +flgE2008(Am) | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | + | no differences | |
| | | | ||
| − | medium: | + | *medium:Tryptone motility agar |
| + | *medium:thymidine (0.1 g per liter) | ||
| | | | ||
| − | + | ECO:0007192 | |
| | | | ||
| − | + | motility assay evidence used in manual assertion | |
| | | | ||
PMID:338588 | PMID:338588 | ||
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no differences | no differences | ||
| | | | ||
| − | + | *temperature:37C | |
| + | *medium:Tryptone agar | ||
| + | *medium:thymidine (0.1 g per liter) | ||
| | | | ||
| − | + | ECO:0007040 | |
| | | | ||
| − | + | plaque assay evidence used in manual assertion | |
| | | | ||
PMID:338588 | PMID:338588 | ||
| | | | ||
| − | [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1541887 Taxonomy ID: 1541887 | + | Bacteriophage Chi [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1541887 Taxonomy ID: 1541887] |
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Latest revision as of 18:03, 14 September 2018
Contents
Strain Summary
| Strain Name |
YK2008 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype |
F- lambda- e14-(?) Rac-0(?) uvrC34 hisG4(Oc) rfbC1 mgl-51 rpsL31(strR) kdgK51 xylA5 mtl-1 argE3(Oc) thiE1 thyA galU51 pyrC46 nalA flgE2008(Am) |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
YK2008 was isolated by selecting for derivatives of YK102 that are resistant to phage Chi and then screening for loss of motility. Note that in the paper[1], the flgE gene is referred to by the older name, flaK.
For the flgE2008(Am) mutation, the allele number was added by an OMP curator following the pattern seen in papers from the Simon lab of naming alleles based on strain numbers. Siegele (talk) 13:44, 18 July 2016 (CDT)
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:692 |
OMP:0007000 |
abolished motility |
Relative to: OMP_AN:691 Genotype differences: +flgE2008(Am) Condition differences: no differences |
|
ECO:0007192 |
motility assay evidence used in manual assertion |
||||
|
OMP_AN:694 |
OMP:0007245 |
abolished sensitivity to bacteriophage |
Relative to: OMP_AN:693 Genotype differences: +flgE2008(Am) Condition differences: no differences |
|
ECO:0007040 |
plaque assay evidence used in manual assertion |
Bacteriophage Chi Taxonomy ID: 1541887 |
| ||
Additional Information
Links
References
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