Difference between revisions of "OMP ST:73188 ! Escherichia coli K-12 JW2985"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW2985
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW2985-2
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
 +
*Subspecies and/or strain: K-12
 +
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ftsP788(del)::FRT-kan-FRT
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
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 +
*PMID:16738554
 +
*[http://cgsc2.biology.yale.edu/Strain.php?ID=108571 Coli Genetic Stock Center]
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
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 +
[http://cgsc2.biology.yale.edu/Strain.php?ID=108571 Coli Genetic Stock Center]
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
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 +
parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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|- align='left' bgcolor='#CCCCFF'
 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:32864
 +
|
 +
 +
|
 +
OMP:0007250
 +
|
 +
increased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27509
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
 +
|
 +
 +
*chemical concentration=  50 ug/ml
 +
*normalized fitness= 3.36
 +
|-
 +
|
 +
OMP_AN:32865
 +
|
 +
 +
|
 +
OMP:0007249
 +
|
 +
decreased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27501
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Dibucaine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:247956) Dibucaine
 +
|
 +
 +
*chemical concentration=  1.2 mM
 +
*normalized fitness= -6.78
 +
|-
 +
|
 +
OMP_AN:32866
 +
|
 +
 +
|
 +
OMP:0007250
 +
|
 +
increased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27570
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Propidium iodide
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:51240) Propidium iodide
 +
|
 +
 +
*chemical concentration=  50 ug/ml
 +
*normalized fitness= 3.61
 +
|-
 +
|
 +
OMP_AN:32867
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27516
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Thiolactomycin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:445629) Thiolactomycin
 +
|
 +
 +
*chemical concentration=  5 uM
 +
*normalized fitness= -3.61
 +
|-
 +
|
 +
OMP_AN:32868
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27536
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Ceftazidime hydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:3509) Ceftazidime hydrate
 +
|
 +
 +
*chemical concentration=  0.075 ug/ml
 +
*normalized fitness= -3.83
 +
|-
 +
|
 +
OMP_AN:32869
 +
|
 +
 +
|
 +
OMP:0007249
 +
|
 +
decreased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27569
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:EtOH
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:16236) EtOH
 +
|
 +
 +
*chemical concentration=  6 %
 +
*normalized fitness= -4.2
 +
|-
 +
|
 +
OMP_AN:32870
 +
|
 +
 +
|
 +
OMP:0007520
 +
|
 +
increased population growth in high osmolarity
 +
|
 +
Relative to: OMP_AN:27595
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:NaCl
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:26710) NaCl
 +
|
 +
 +
*chemical concentration= 150 mM
 +
*normalized fitness= 4.29
 +
|-
 +
|
 +
OMP_AN:32871
 +
|
 +
 +
|
 +
OMP:0007008
 +
|
 +
decreased population growth at acidic pH
 +
|
 +
Relative to: OMP_AN:27622
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ftsP788(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:MES-HOMOPIPES
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
 +
|
 +
 +
*chemical concentration= pH 4
 +
*normalized fitness= -7.45
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Latest revision as of 01:10, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW2985

Synonyms

JW2985-2

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ftsP788(del)::FRT-kan-FRT

Strain Reference
Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:32864

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27509

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cisplatin-cis-Diamineplatinum(II) dichloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride

  • chemical concentration= 50 ug/ml
  • normalized fitness= 3.36

OMP_AN:32865

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27501

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Dibucaine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:247956) Dibucaine

  • chemical concentration= 1.2 mM
  • normalized fitness= -6.78

OMP_AN:32866

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27570

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Propidium iodide
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:51240) Propidium iodide

  • chemical concentration= 50 ug/ml
  • normalized fitness= 3.61

OMP_AN:32867

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27516

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Thiolactomycin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:445629) Thiolactomycin

  • chemical concentration= 5 uM
  • normalized fitness= -3.61

OMP_AN:32868

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27536

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Ceftazidime hydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:3509) Ceftazidime hydrate

  • chemical concentration= 0.075 ug/ml
  • normalized fitness= -3.83

OMP_AN:32869

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27569

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:EtOH
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:16236) EtOH

  • chemical concentration= 6 %
  • normalized fitness= -4.2

OMP_AN:32870

OMP:0007520

increased population growth in high osmolarity

Relative to: OMP_AN:27595

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:NaCl
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:26710) NaCl

  • chemical concentration= 150 mM
  • normalized fitness= 4.29

OMP_AN:32871

OMP:0007008

decreased population growth at acidic pH

Relative to: OMP_AN:27622

Genotype differences:

+lacZ4787(del)( +ftsP788(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:MES-HOMOPIPES
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES

  • chemical concentration= pH 4
  • normalized fitness= -7.45
edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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