Difference between revisions of "OMP ST:1122 ! Escherichia coli K-12 JW2310"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW2310-2
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Escherichia coli K-12 JW2310
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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JW2310
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JW2310-2
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
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PMID:17122336
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[http://cgsc.biology.yale.edu/Strain.php?ID=108136 Coli Genetic Stock Center]
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L57d1a90c0339c"  class=" tableEdit OMP_annotation_table dataTable"   
 
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:1038
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OMP:0007092
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decreased cell motility by swarming
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Relative to: OMP_AN:881
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<hr>Genotype differences:<br>
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+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cvpA724(del)  -IN(rrnD-rrnE)1
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<hr>Condition differences:<br>
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no differences
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*temperature:33C
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*medium:swarming motility medium
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ECO:0005803
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motility assay evidence
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PMID:17122336
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OMP_AN:31479
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OMP:0007879
 +
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decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27560
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +cvpA724(del)  -lacZ4787(del)
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<hr>Condition differences:<br>
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no differences
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*temperature:37C
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*medium:LB agar
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*medium:Bacitracin Zinc Sulfate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:16219032) Bacitracin Zinc Sulfate
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*chemical concentration=  300 ug/ml
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*normalized fitness= -4.48
  
 
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Latest revision as of 00:33, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW2310

Synonyms

JW2310-2

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cvpA724(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:1038

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cvpA724(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:31479

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27560

Genotype differences:

+lacZ4787(del)( +cvpA724(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Bacitracin Zinc Sulfate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:16219032) Bacitracin Zinc Sulfate

  • chemical concentration= 300 ug/ml
  • normalized fitness= -4.48
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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