Difference between revisions of "OMP ST:1122 ! Escherichia coli K-12 JW2310"
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==Strain Summary== | ==Strain Summary== | ||
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+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Strain Name | ||
+ | || | ||
+ | Escherichia coli K-12 JW2310 | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Synonyms | ||
+ | || | ||
+ | JW2310-2 | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Taxon Information | ||
+ | || | ||
+ | *Pangenome: Escherichia coli | ||
+ | *Subspecies and/or strain: K-12 | ||
+ | *NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333] | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Genotype | ||
+ | || | ||
+ | DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cvpA724(del)::kan | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference | ||
+ | || | ||
+ | [http://cgsc.biology.yale.edu/Strain.php?ID=108136 Coli Genetic Stock Center] | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Strain availability | ||
+ | || | ||
+ | [http://cgsc.biology.yale.edu/Strain.php?ID=108136 Coli Genetic Stock Center] | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Ancestry | ||
+ | || | ||
+ | parent:OMP ST:800 ! Escherichia coli K-12 BW25113 | ||
+ | |- | ||
+ | !align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes | ||
+ | || | ||
+ | |||
+ | |||
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==Phenotype Annotation== | ==Phenotype Annotation== | ||
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+ | !|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:1038 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007092 | ||
+ | | | ||
+ | decreased cell motility by swarming | ||
+ | | | ||
+ | Relative to: OMP_AN:881 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cvpA724(del) -IN(rrnD-rrnE)1 | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | *temperature:33C | ||
+ | *medium:swarming motility medium | ||
+ | | | ||
+ | ECO:0005803 | ||
+ | | | ||
+ | motility assay evidence | ||
+ | | | ||
+ | PMID:17122336 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:31479 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007879 | ||
+ | | | ||
+ | decreased resistance to an antimicrobial agent | ||
+ | | | ||
+ | Relative to: OMP_AN:27560 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +cvpA724(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:LB agar | ||
+ | *medium:Bacitracin Zinc Sulfate | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CID:16219032) Bacitracin Zinc Sulfate | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 300 ug/ml | ||
+ | *normalized fitness= -4.48 | ||
+ | |||
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Latest revision as of 00:33, 23 October 2019
Contents
Strain Summary
Strain Name |
Escherichia coli K-12 JW2310 |
---|---|
Synonyms |
JW2310-2 |
Taxon Information |
|
Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cvpA724(del)::kan |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
Phenotype Annotation
Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:1038 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cvpA724(del) -IN(rrnD-rrnE)1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:31479 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27560 Genotype differences: +lacZ4787(del)( +cvpA724(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16219032) Bacitracin Zinc Sulfate |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
- ↑ Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page