Difference between revisions of "OMP ST:1120 ! Escherichia coli K-12 JW0659"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW659-5
+
Escherichia coli K-12 JW0659
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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JW0659
+
JW0659-5
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8825.Q57d1a79b4a307&page=8825&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8825.Q57d1a79b4a307&page=8825&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
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<!-- OMP category tags -->[[Category:OMP ST:800 ! Escherichia coli K-12 BW25113 derivatives]]
 
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** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I57d1a79b4d636"  class=" tableEdit OMP_annotation_table dataTable"   
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I57d1a79b4d636"  class=" tableEdit OMP_annotation_table dataTable"   
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
|-  
 
|-  
 
|
 
|
Line 98: Line 95:
 
|
 
|
 
   
 
   
 +
|-
 +
|
 +
OMP_AN:28956
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27601
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -7.08
 +
|-
 +
|
 +
OMP_AN:28957
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27611
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -7.08
 +
|-
 +
|
 +
OMP_AN:28958
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27531
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Ampicillin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:28971) Ampicillin
 +
|
 +
 +
*chemical concentration=  4 ug/ml
 +
*normalized fitness= -3.36
 +
|-
 +
|
 +
OMP_AN:28959
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27552
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Azidothymidine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:10110) Azidothymidine
 +
|
 +
 +
*chemical concentration=  1 ng/ml
 +
*normalized fitness= -3.2
 +
|-
 +
|
 +
OMP_AN:28960
 +
|
 +
 +
|
 +
OMP:0007886
 +
|
 +
decreased resistance to a metal
 +
|
 +
Relative to: OMP_AN:27579
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Copper stress-CuCl2 dihydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
 +
|
 +
 +
*chemical concentration= 1 mM (LB)
 +
*normalized fitness= -4.58
 +
|-
 +
|
 +
OMP_AN:28961
 +
|
 +
 +
|
 +
OMP:0007377
 +
|
 +
decreased resistance to an alkylating agent
 +
|
 +
Relative to: OMP_AN:27502
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:methyl methanesulfonate (MMS)
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
 +
|
 +
 +
*chemical concentration= 0.05%
 +
*normalized fitness= -5.53
 +
|-
 +
|
 +
OMP_AN:28962
 +
|
 +
 +
|
 +
OMP:0007249
 +
|
 +
decreased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27510
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Mitomycin C
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:27504) Mitomycin C
 +
|
 +
 +
*chemical concentration= 0.1 ug/ml
 +
*normalized fitness= -3.73
 +
|-
 +
|
 +
OMP_AN:28963
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27564
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Phleomycin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75044) Phleomycin
 +
|
 +
 +
*chemical concentration=  1 ug/ml
 +
*normalized fitness= -3.93
 +
|-
 +
|
 +
OMP_AN:28964
 +
|
 +
 +
|
 +
OMP:0007896
 +
|
 +
decreased resistance to a surfactant
 +
|
 +
Relative to: OMP_AN:27582
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:SDS
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:8984) SDS
 +
|
 +
 +
*chemical concentration= 0.5 %
 +
*normalized fitness= -5.93
 +
|-
 +
|
 +
OMP_AN:28965
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27607
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -4.67
 +
|-
 +
|
 +
OMP_AN:28966
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27617
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -4.67
 +
|-
 +
|
 +
OMP_AN:28967
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27516
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Thiolactomycin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:445629) Thiolactomycin
 +
|
 +
 +
*chemical concentration=  50 uM
 +
*normalized fitness= -3.61
 +
|-
 +
|
 +
OMP_AN:28968
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27504
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +ubiF722(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Novobiocin sodium salt
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:31924) Novobiocin sodium salt
 +
|
 +
 +
*chemical concentration=  8 ug/ml
 +
*normalized fitness= -4.67
  
 
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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8825.I57d1a79b4d636&page=8825&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
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Latest revision as of 21:08, 22 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW0659

Synonyms

JW0659-5

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ubiF722(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:1036

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +ubiF722(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:28956

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27601

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -7.08

OMP_AN:28957

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27611

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -7.08

OMP_AN:28958

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27531

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Ampicillin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:28971) Ampicillin

  • chemical concentration= 4 ug/ml
  • normalized fitness= -3.36

OMP_AN:28959

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27552

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Azidothymidine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:10110) Azidothymidine

  • chemical concentration= 1 ng/ml
  • normalized fitness= -3.2

OMP_AN:28960

OMP:0007886

decreased resistance to a metal

Relative to: OMP_AN:27579

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Copper stress-CuCl2 dihydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate

  • chemical concentration= 1 mM (LB)
  • normalized fitness= -4.58

OMP_AN:28961

OMP:0007377

decreased resistance to an alkylating agent

Relative to: OMP_AN:27502

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:methyl methanesulfonate (MMS)
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:25255) methyl methanesulfonate (MMS)

  • chemical concentration= 0.05%
  • normalized fitness= -5.53

OMP_AN:28962

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27510

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Mitomycin C
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:27504) Mitomycin C

  • chemical concentration= 0.1 ug/ml
  • normalized fitness= -3.73

OMP_AN:28963

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27564

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Phleomycin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75044) Phleomycin

  • chemical concentration= 1 ug/ml
  • normalized fitness= -3.93

OMP_AN:28964

OMP:0007896

decreased resistance to a surfactant

Relative to: OMP_AN:27582

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:SDS
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:8984) SDS

  • chemical concentration= 0.5 %
  • normalized fitness= -5.93

OMP_AN:28965

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27607

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -4.67

OMP_AN:28966

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27617

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -4.67

OMP_AN:28967

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27516

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Thiolactomycin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:445629) Thiolactomycin

  • chemical concentration= 50 uM
  • normalized fitness= -3.61

OMP_AN:28968

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27504

Genotype differences:

+lacZ4787(del)( +ubiF722(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Novobiocin sodium salt
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:31924) Novobiocin sodium salt

  • chemical concentration= 8 ug/ml
  • normalized fitness= -4.67
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References

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  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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