Difference between revisions of "OMP ST:1114 ! Escherichia coli K-12 JW0511"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(touch)
 
(30 intermediate revisions by the same user not shown)
Line 6: Line 6:
 
******************************************************************************************
 
******************************************************************************************
 
*  
 
*  
−
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
+
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
****************************************************************************************** -->
Line 14: Line 14:
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
||
 
||
−
Escherichia coli K-12 JW0511-1
+
Escherichia coli K-12 JW0511
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
||
 
||
−
JW0511
+
JW0511-1
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
Line 49: Line 49:
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8817.H57d04e2eac05f&page=8817&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8817.H57d04e2eac05f&page=8817&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|}
 
|}
−
<noinclude>
 
−
<!-- OMP category tags -->[[Category:OMP ST:800 ! Escherichia coli K-12 BW25113 derivatives]]
 
−
</noinclude>
 
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.8817.H57d04e2eac05f--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.8817.H57d04e2eac05f--></protect>
  
Line 63: Line 60:
 
******************************************************************************************
 
******************************************************************************************
 
*  
 
*  
−
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
+
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
****************************************************************************************** -->
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P57d04e2eb1a6f"  class=" tableEdit OMP_annotation_table dataTable"   
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P57d04e2eb1a6f"  class=" tableEdit OMP_annotation_table dataTable"   
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
|-  
 
|-  
 
|
 
|
Line 98: Line 95:
 
|
 
|
 
   
 
   
 +
|-
 +
|
 +
OMP_AN:28595
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27559
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Actinomycin D
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:27666 CID:457193) Actinomycin D
 +
|
 +
 +
*chemical concentration=  15 ug/ml
 +
*normalized fitness= -3.72
 +
|-
 +
|
 +
OMP_AN:28596
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27601
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -11.98
 +
|-
 +
|
 +
OMP_AN:28597
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27611
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -11.98
 +
|-
 +
|
 +
OMP_AN:28598
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27534
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Cefoxitin sodium hydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:3501) Cefoxitin sodium hydrate
 +
|
 +
 +
*chemical concentration= 0.25 ug/ml
 +
*normalized fitness= -5.48
 +
|-
 +
|
 +
OMP_AN:28599
 +
|
 +
 +
|
 +
OMP:0007903
 +
|
 +
decreased resistance to bile acids
 +
|
 +
Relative to: OMP_AN:27586
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Deoxycholate sodium
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:9177) Deoxycholate sodium
 +
|
 +
 +
*chemical concentration=  2 %
 +
*normalized fitness= -3.49
 +
|-
 +
|
 +
OMP_AN:28600
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27606
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:N-Acetyl-D-glucosamine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
 +
|
 +
 +
*chemical concentration= 0.15%
 +
*normalized fitness= -12.37
 +
|-
 +
|
 +
OMP_AN:28601
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27616
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:N-Acetyl-D-glucosamine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
 +
|
 +
 +
*chemical concentration= 0.15%
 +
*normalized fitness= -12.37
 +
|-
 +
|
 +
OMP_AN:28602
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27602
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Glucosamine hydrochloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:91431) D-(+) Glucosamine hydrochloride
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -17.39
 +
|-
 +
|
 +
OMP_AN:28603
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27612
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Glucosamine hydrochloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:91431) D-(+) Glucosamine hydrochloride
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -17.39
 +
|-
 +
|
 +
OMP_AN:28604
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27603
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -10.88
 +
|-
 +
|
 +
OMP_AN:28605
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27613
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -10.88
 +
|-
 +
|
 +
OMP_AN:28606
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27604
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 +
*chemical concentration= 0.4%
 +
*normalized fitness= -13.21
 +
|-
 +
|
 +
OMP_AN:28607
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27614
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 +
*chemical concentration= 0.4%
 +
*normalized fitness= -13.21
 +
|-
 +
|
 +
OMP_AN:28608
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27605
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Maltose monohydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:23615261) D-(+) Maltose monohydrate
 +
|
 +
 +
*chemical concentration= 0.1%
 +
*normalized fitness= -10.75
 +
|-
 +
|
 +
OMP_AN:28609
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27615
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Maltose monohydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:23615261) D-(+) Maltose monohydrate
 +
|
 +
 +
*chemical concentration= 0.1%
 +
*normalized fitness= -10.75
 +
|-
 +
|
 +
OMP_AN:28610
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27537
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Mecillinam
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:51208) Mecillinam
 +
|
 +
 +
*chemical concentration= 0.03 ug/ml
 +
*normalized fitness= -3.88
 +
|-
 +
|
 +
OMP_AN:28611
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27600
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:NH4Cl
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:31206) NH4Cl
 +
|
 +
 +
*chemical concentration= 9.5mm
 +
*normalized fitness= -15.42
 +
|-
 +
|
 +
OMP_AN:28612
 +
|
 +
 +
|
 +
OMP:0007032
 +
|
 +
decreased utilization of inorganic nitrogen source
 +
|
 +
Relative to: OMP_AN:27610
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:NH4Cl
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:31206) NH4Cl
 +
|
 +
 +
*chemical concentration= 9.5mm
 +
*normalized fitness= -15.42
 +
|-
 +
|
 +
OMP_AN:28613
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27503
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Nitrofurantoin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:71415) Nitrofurantoin
 +
|
 +
 +
*chemical concentration=  1.5 ug/ml
 +
*normalized fitness= -3.45
 +
|-
 +
|
 +
OMP_AN:28614
 +
|
 +
 +
|
 +
OMP:0007249
 +
|
 +
decreased resistance to a chemical
 +
|
 +
Relative to: OMP_AN:27574
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Paraquat dichloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:28786) Paraquat dichloride
 +
|
 +
 +
*chemical concentration=  5 uM
 +
*normalized fitness= -3.51
 +
|-
 +
|
 +
OMP_AN:28615
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27607
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -8.66
 +
|-
 +
|
 +
OMP_AN:28616
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27617
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -8.66
 +
|-
 +
|
 +
OMP_AN:28617
 +
|
 +
 +
|
 +
OMP:0007903
 +
|
 +
decreased resistance to bile acids
 +
|
 +
Relative to: OMP_AN:27584
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Taurocholic acid sodium salt hydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
 +
|
 +
 +
*chemical concentration=  0.5 %
 +
*normalized fitness= -5.99
 +
|-
 +
|
 +
OMP_AN:28618
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27533
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Carbenicillin disodium
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:34609) Carbenicillin disodium
 +
|
 +
 +
*chemical concentration=  1.5 ug/ml
 +
*normalized fitness= -3.96
 +
|-
 +
|
 +
OMP_AN:28619
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27544
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Chloramphenicol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17698) Chloramphenicol
 +
|
 +
 +
*chemical concentration= 0.5 ug/ml
 +
*normalized fitness= -3.9
 +
|-
 +
|
 +
OMP_AN:28620
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27598
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron excess-FeSO4 heptahydride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
 +
|
 +
 +
*chemical concentration= 1mM (MOPS; normal 100uM)
 +
*normalized fitness= -14.8
 +
|-
 +
|
 +
OMP_AN:28621
 +
|
 +
 +
|
 +
OMP:0007886
 +
|
 +
decreased resistance to a metal
 +
|
 +
Relative to: OMP_AN:27608
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron excess-FeSO4 heptahydride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
 +
|
 +
 +
*chemical concentration= 1mM (MOPS; normal 100uM)
 +
*normalized fitness= -14.8
 +
|-
 +
|
 +
OMP_AN:28622
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27599
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron starvation-FeSO4·7H2O
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
 +
|
 +
 +
*chemical concentration= 2uM (MOPS; normal 100uM)
 +
*normalized fitness= -12.7
 +
|-
 +
|
 +
OMP_AN:28623
 +
|
 +
 +
|
 +
OMP:0007937
 +
|
 +
decreased resistance to nutrient limitation
 +
|
 +
Relative to: OMP_AN:27609
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +purK735(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron starvation-FeSO4·7H2O
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
 +
|
 +
 +
*chemical concentration= 2uM (MOPS; normal 100uM)
 +
*normalized fitness= -12.7
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8817.P57d04e2eb1a6f&page=8817&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8817.P57d04e2eb1a6f&page=8817&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
|}
 
|}
−
<noinclude>
 
−
<!-- OMP category tags -->
 
−
</noinclude>
 
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.8817.P57d04e2eb1a6f--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.8817.P57d04e2eb1a6f--></protect>
  

Latest revision as of 21:00, 22 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW0511

Synonyms

JW0511-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 purK735(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:1029

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +purK735(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:28595

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27559

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Actinomycin D
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:27666 CID:457193) Actinomycin D

  • chemical concentration= 15 ug/ml
  • normalized fitness= -3.72

OMP_AN:28596

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27601

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -11.98

OMP_AN:28597

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27611

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -11.98

OMP_AN:28598

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27534

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cefoxitin sodium hydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:3501) Cefoxitin sodium hydrate

  • chemical concentration= 0.25 ug/ml
  • normalized fitness= -5.48

OMP_AN:28599

OMP:0007903

decreased resistance to bile acids

Relative to: OMP_AN:27586

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Deoxycholate sodium
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:9177) Deoxycholate sodium

  • chemical concentration= 2 %
  • normalized fitness= -3.49

OMP_AN:28600

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27606

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:N-Acetyl-D-glucosamine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:506227) N-Acetyl-D-glucosamine

  • chemical concentration= 0.15%
  • normalized fitness= -12.37

OMP_AN:28601

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27616

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:N-Acetyl-D-glucosamine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:506227) N-Acetyl-D-glucosamine

  • chemical concentration= 0.15%
  • normalized fitness= -12.37

OMP_AN:28602

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27602

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Glucosamine hydrochloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:91431) D-(+) Glucosamine hydrochloride

  • chemical concentration= 0.2%
  • normalized fitness= -17.39

OMP_AN:28603

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27612

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Glucosamine hydrochloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:91431) D-(+) Glucosamine hydrochloride

  • chemical concentration= 0.2%
  • normalized fitness= -17.39

OMP_AN:28604

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27603

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -10.88

OMP_AN:28605

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27613

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -10.88

OMP_AN:28606

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27604

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= -13.21

OMP_AN:28607

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27614

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= -13.21

OMP_AN:28608

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27605

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Maltose monohydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23615261) D-(+) Maltose monohydrate

  • chemical concentration= 0.1%
  • normalized fitness= -10.75

OMP_AN:28609

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27615

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Maltose monohydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23615261) D-(+) Maltose monohydrate

  • chemical concentration= 0.1%
  • normalized fitness= -10.75

OMP_AN:28610

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27537

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Mecillinam
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:51208) Mecillinam

  • chemical concentration= 0.03 ug/ml
  • normalized fitness= -3.88

OMP_AN:28611

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27600

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= -15.42

OMP_AN:28612

OMP:0007032

decreased utilization of inorganic nitrogen source

Relative to: OMP_AN:27610

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= -15.42

OMP_AN:28613

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27503

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Nitrofurantoin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:71415) Nitrofurantoin

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= -3.45

OMP_AN:28614

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27574

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Paraquat dichloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:28786) Paraquat dichloride

  • chemical concentration= 5 uM
  • normalized fitness= -3.51

OMP_AN:28615

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27607

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -8.66

OMP_AN:28616

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27617

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -8.66

OMP_AN:28617

OMP:0007903

decreased resistance to bile acids

Relative to: OMP_AN:27584

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Taurocholic acid sodium salt hydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23687511) Taurocholic acid sodium salt hydrate

  • chemical concentration= 0.5 %
  • normalized fitness= -5.99

OMP_AN:28618

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27533

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Carbenicillin disodium
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:34609) Carbenicillin disodium

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= -3.96

OMP_AN:28619

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27544

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Chloramphenicol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17698) Chloramphenicol

  • chemical concentration= 0.5 ug/ml
  • normalized fitness= -3.9

OMP_AN:28620

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27598

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron excess-FeSO4 heptahydride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride

  • chemical concentration= 1mM (MOPS; normal 100uM)
  • normalized fitness= -14.8

OMP_AN:28621

OMP:0007886

decreased resistance to a metal

Relative to: OMP_AN:27608

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron excess-FeSO4 heptahydride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride

  • chemical concentration= 1mM (MOPS; normal 100uM)
  • normalized fitness= -14.8

OMP_AN:28622

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27599

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron starvation-FeSO4·7H2O
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O

  • chemical concentration= 2uM (MOPS; normal 100uM)
  • normalized fitness= -12.7

OMP_AN:28623

OMP:0007937

decreased resistance to nutrient limitation

Relative to: OMP_AN:27609

Genotype differences:

+lacZ4787(del)( +purK735(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron starvation-FeSO4·7H2O
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O

  • chemical concentration= 2uM (MOPS; normal 100uM)
  • normalized fitness= -12.7
edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:1114_!_Escherichia_coli_K-12_JW0511&oldid=134117"