Difference between revisions of "OMP ST:1107 ! Escherichia coli K-12 JW1237"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW1237-3
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Escherichia coli K-12 JW1237
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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JW1237
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JW1237-3
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
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PMID:17122336
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[http://cgsc.biology.yale.edu/Strain.php?ID=107397 Coli Genetic Stock Center]
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
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*temperature:33C
 
*temperature:33C
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*medium:swarming medium
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*medium:swarming motility medium
 
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ECO:0000181
+
ECO:0005803
 
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in vitro assay evidence
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motility assay evidence
 
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PMID:17122336
 
PMID:17122336
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Swarming motility assay  
+
 +
|-
 +
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OMP_AN:29955
 +
|
 +
 
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27550
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +oppC752(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Ethidium Bromide
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:4883) Ethidium Bromide
 +
|
 +
 
 +
*chemical concentration=  10 ug/ml
 +
*normalized fitness= -3.13
 +
|-
 +
|
 +
OMP_AN:29956
 +
|
 +
 
 +
|
 +
OMP:0006040
 +
|
 +
decreased resistance to quinolone
 +
|
 +
Relative to: OMP_AN:27542
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +oppC752(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Norfloxacin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:100246) Norfloxacin
 +
|
 +
 
 +
*chemical concentration= 0.01 ug/ml
 +
*normalized fitness= -4.46
 +
|-
 +
|
 +
OMP_AN:29957
 +
|
 +
 
 +
|
 +
OMP:0007878
 +
|
 +
increased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27500
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +oppC752(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Trimethoprim
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:45924) Trimethoprim
 +
|
 +
 
 +
*chemical concentration=  0.2 ug/ml
 +
*normalized fitness= 4.52
 +
|-
 +
|
 +
OMP_AN:29958
 +
|
 +
 
 +
|
 +
OMP:0005097
 +
|
 +
increased resistance to UV radiation
 +
|
 +
Relative to: OMP_AN:27619
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +oppC752(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:UV
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
 
 +
|
 +
 
 +
*chemical concentration=  12 sec
 +
*normalized fitness= 3.46
  
 
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Latest revision as of 21:27, 22 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW1237

Synonyms

JW1237-3

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 oppC752(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:1023

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +oppC752(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:29955

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27550

Genotype differences:

+lacZ4787(del)( +oppC752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Ethidium Bromide
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:4883) Ethidium Bromide

  • chemical concentration= 10 ug/ml
  • normalized fitness= -3.13

OMP_AN:29956

OMP:0006040

decreased resistance to quinolone

Relative to: OMP_AN:27542

Genotype differences:

+lacZ4787(del)( +oppC752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Norfloxacin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:100246) Norfloxacin

  • chemical concentration= 0.01 ug/ml
  • normalized fitness= -4.46

OMP_AN:29957

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27500

Genotype differences:

+lacZ4787(del)( +oppC752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Trimethoprim
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:45924) Trimethoprim

  • chemical concentration= 0.2 ug/ml
  • normalized fitness= 4.52

OMP_AN:29958

OMP:0005097

increased resistance to UV radiation

Relative to: OMP_AN:27619

Genotype differences:

+lacZ4787(del)( +oppC752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:UV
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

  • chemical concentration= 12 sec
  • normalized fitness= 3.46
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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