Difference between revisions of "OMP ST:1055 ! Escherichia coli K-12 JW2757"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW2757-1
+
Escherichia coli K-12 JW2757
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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JW2757
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JW2757-1
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O57c8911f1e01a"  class=" tableEdit OMP_annotation_table dataTable"   
 
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|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
|-  
 
|-  
 
|
 
|
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|
 
|
 
   
 
   
 +
|-
 +
|
 +
OMP_AN:32498
 +
|
 +
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27603
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -4.11
 +
|-
 +
|
 +
OMP_AN:32499
 +
|
 +
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27613
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -4.11
 +
|-
 +
|
 +
OMP_AN:32500
 +
|
 +
 +
|
 +
OMP:0007074
 +
|
 +
increased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27604
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 +
*chemical concentration= 0.4%
 +
*normalized fitness= 3.24
 +
|-
 +
|
 +
OMP_AN:32501
 +
|
 +
 +
|
 +
OMP:0007071
 +
|
 +
increased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27614
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 +
*chemical concentration= 0.4%
 +
*normalized fitness= 3.24
 +
|-
 +
|
 +
OMP_AN:32502
 +
|
 +
 +
|
 +
OMP:0007878
 +
|
 +
increased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27553
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Puromycin dihydrochloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:8642) Puromycin dihydrochloride
 +
|
 +
 +
*chemical concentration=  5 ug/ml
 +
*normalized fitness= 4.68
 +
|-
 +
|
 +
OMP_AN:32503
 +
|
 +
 +
|
 +
OMP:0006044
 +
|
 +
decreased resistance to beta-lactam
 +
|
 +
Relative to: OMP_AN:27536
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Ceftazidime hydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:3509) Ceftazidime hydrate
 +
|
 +
 +
*chemical concentration=  0.05 ug/ml
 +
*normalized fitness= -3.69
 +
|-
 +
|
 +
OMP_AN:32504
 +
|
 +
 +
|
 +
OMP:0006040
 +
|
 +
decreased resistance to quinolone
 +
|
 +
Relative to: OMP_AN:27542
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +barA784(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Norfloxacin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:100246) Norfloxacin
 +
|
 +
 +
*chemical concentration=  0.04 ug/ml
 +
*normalized fitness= -3.43
  
 
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Latest revision as of 01:03, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW2757

Synonyms

JW2757-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 barA784(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:967

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +barA784(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:32498

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27603

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -4.11

OMP_AN:32499

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27613

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -4.11

OMP_AN:32500

OMP:0007074

increased growth factor requirement

Relative to: OMP_AN:27604

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= 3.24

OMP_AN:32501

OMP:0007071

increased organic carbon source utilization

Relative to: OMP_AN:27614

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= 3.24

OMP_AN:32502

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27553

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Puromycin dihydrochloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:8642) Puromycin dihydrochloride

  • chemical concentration= 5 ug/ml
  • normalized fitness= 4.68

OMP_AN:32503

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27536

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Ceftazidime hydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:3509) Ceftazidime hydrate

  • chemical concentration= 0.05 ug/ml
  • normalized fitness= -3.69

OMP_AN:32504

OMP:0006040

decreased resistance to quinolone

Relative to: OMP_AN:27542

Genotype differences:

+lacZ4787(del)( +barA784(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Norfloxacin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:100246) Norfloxacin

  • chemical concentration= 0.04 ug/ml
  • normalized fitness= -3.43
edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:1055_!_Escherichia_coli_K-12_JW2757&oldid=137997"