Difference between revisions of "OMP ST:1055 ! Escherichia coli K-12 JW2757"
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name | !align=left align='left' bgcolor='#CCCCFF' |Strain Name | ||
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− | Escherichia coli K-12 JW2757 | + | Escherichia coli K-12 JW2757 |
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Synonyms | !align=left align='left' bgcolor='#CCCCFF' |Synonyms | ||
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− | JW2757 | + | JW2757-1 |
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information | !align=left align='left' bgcolor='#CCCCFF' |Taxon Information | ||
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference | ||
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− | + | [http://cgsc.biology.yale.edu/Strain.php?ID=108441 Coli Genetic Stock Center] | |
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability | !align=left align='left' bgcolor='#CCCCFF' |Strain availability | ||
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− | !|Annotation ID!! | + | !|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes |
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*temperature:33C | *temperature:33C | ||
− | *medium: | + | *medium:swarming motility medium |
| | | | ||
− | ECO: | + | ECO:0005803 |
| | | | ||
− | + | motility assay evidence | |
| | | | ||
PMID:17122336 | PMID:17122336 | ||
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− | + | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32498 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007075 | ||
+ | | | ||
+ | decreased growth factor requirement | ||
+ | | | ||
+ | Relative to: OMP_AN:27603 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:M9 | ||
+ | *medium:D-Glucose anhydrous | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:42758) D-Glucose anhydrous | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.2% | ||
+ | *normalized fitness= -4.11 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32499 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007070 | ||
+ | | | ||
+ | decreased organic carbon source utilization | ||
+ | | | ||
+ | Relative to: OMP_AN:27613 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:M9 | ||
+ | *medium:D-Glucose anhydrous | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:42758) D-Glucose anhydrous | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.2% | ||
+ | *normalized fitness= -4.11 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32500 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007074 | ||
+ | | | ||
+ | increased growth factor requirement | ||
+ | | | ||
+ | Relative to: OMP_AN:27604 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:M9 | ||
+ | *medium:Glycerol | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:17754) Glycerol | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.4% | ||
+ | *normalized fitness= 3.24 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32501 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007071 | ||
+ | | | ||
+ | increased organic carbon source utilization | ||
+ | | | ||
+ | Relative to: OMP_AN:27614 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:M9 | ||
+ | *medium:Glycerol | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:17754) Glycerol | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.4% | ||
+ | *normalized fitness= 3.24 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32502 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007878 | ||
+ | | | ||
+ | increased resistance to an antimicrobial agent | ||
+ | | | ||
+ | Relative to: OMP_AN:27553 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:LB agar | ||
+ | *medium:Puromycin dihydrochloride | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:8642) Puromycin dihydrochloride | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 5 ug/ml | ||
+ | *normalized fitness= 4.68 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32503 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0006044 | ||
+ | | | ||
+ | decreased resistance to beta-lactam | ||
+ | | | ||
+ | Relative to: OMP_AN:27536 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:LB agar | ||
+ | *medium:Ceftazidime hydrate | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:3509) Ceftazidime hydrate | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.05 ug/ml | ||
+ | *normalized fitness= -3.69 | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:32504 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0006040 | ||
+ | | | ||
+ | decreased resistance to quinolone | ||
+ | | | ||
+ | Relative to: OMP_AN:27542 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | +lacZ4787(del)( +barA784(del) -lacZ4787(del) | ||
+ | <hr>Condition differences:<br> | ||
+ | no differences | ||
+ | | | ||
+ | |||
+ | *temperature:37C | ||
+ | *medium:LB agar | ||
+ | *medium:Norfloxacin | ||
+ | | | ||
+ | ECO:0007005 | ||
+ | | | ||
+ | high throughput direct assay evidence used in manual assertion | ||
+ | | | ||
+ | PMID:21185072 | ||
+ | | | ||
+ | towards some (CHEBI:100246) Norfloxacin | ||
+ | | | ||
+ | |||
+ | *chemical concentration= 0.04 ug/ml | ||
+ | *normalized fitness= -3.43 | ||
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Latest revision as of 01:03, 23 October 2019
Contents
Strain Summary
Strain Name |
Escherichia coli K-12 JW2757 |
---|---|
Synonyms |
JW2757-1 |
Taxon Information |
|
Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 barA784(del)::kan |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
Phenotype Annotation
Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:967 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +barA784(del) -IN(rrnD-rrnE)1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:32498 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
OMP_AN:32499 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
OMP_AN:32500 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
OMP_AN:32501 |
OMP:0007071 |
increased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
OMP_AN:32502 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27553 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8642) Puromycin dihydrochloride |
| ||
OMP_AN:32503 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27536 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3509) Ceftazidime hydrate |
| ||
OMP_AN:32504 |
OMP:0006040 |
decreased resistance to quinolone |
Relative to: OMP_AN:27542 Genotype differences: +lacZ4787(del)( +barA784(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:100246) Norfloxacin |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
e
o
- OMP:0006040 ! decreased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007071 ! increased organic carbon source utilization
- OMP:0007074 ! increased growth factor requirement
- OMP:0007075 ! decreased growth factor requirement
- OMP:0007092 ! decreased motility by swarming
- OMP:0007878 ! increased resistance to an antimicrobial agent