Difference between revisions of "OMP ST:1043 ! Escherichia coli K-12 JW5086"

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==Strain Summary==
 
==Strain Summary==
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{|  id="Z57c8860bd8562"  class=" tableEdit Strain_info_table" 
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
||
 +
Escherichia coli K-12 JW5086
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
JW5086-3
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
||
 +
*Pangenome: Escherichia coli
 +
*Subspecies and/or strain: K-12
 +
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 fepA721(del)::kan
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
[http://cgsc.biology.yale.edu/Strain.php?ID=109446 Coli Genetic Stock Center]
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
[http://cgsc.biology.yale.edu/Strain.php?ID=109446 Coli Genetic Stock Center]
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
||
 +
 
 +
 
 +
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T57c8860bdb528"  class=" tableEdit OMP_annotation_table dataTable" 
 +
|- align='left' bgcolor='#CCCCFF'
 +
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:955
 +
|
 +
 
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:881
 +
 
 +
<hr>Genotype differences:<br>
 +
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +fepA721(del)  -IN(rrnD-rrnE)1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:33C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:17122336
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:35620
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27601
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -6.67
 +
|-
 +
|
 +
OMP_AN:35621
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27611
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Sodium Acetate anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:32954) Sodium Acetate anhydrous
 +
|
 +
 
 +
*chemical concentration= 0.6%
 +
*normalized fitness= -6.67
 +
|-
 +
|
 +
OMP_AN:35622
 +
|
 +
 
 +
|
 +
OMP:0006037
 +
|
 +
increased resistance to macrolide
 +
|
 +
Relative to: OMP_AN:27518
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Azithromycin
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:2955) Azithromycin
 +
|
 +
 
 +
*chemical concentration=  1 ug/ml
 +
*normalized fitness= 3.5
 +
|-
 +
|
 +
OMP_AN:35623
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27606
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:N-Acetyl-D-glucosamine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
 +
|
 +
 
 +
*chemical concentration= 0.15%
 +
*normalized fitness= -12.78
 +
|-
 +
|
 +
OMP_AN:35624
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27616
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:N-Acetyl-D-glucosamine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
 +
|
 +
 
 +
*chemical concentration= 0.15%
 +
*normalized fitness= -12.78
 +
|-
 +
|
 +
OMP_AN:35625
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27602
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Glucosamine hydrochloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:91431) D-(+) Glucosamine hydrochloride
 +
|
 +
 
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -7.57
 +
|-
 +
|
 +
OMP_AN:35626
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27612
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Glucosamine hydrochloride
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:91431) D-(+) Glucosamine hydrochloride
 +
|
 +
 
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -7.57
 +
|-
 +
|
 +
OMP_AN:35627
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27603
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -9.6
 +
|-
 +
|
 +
OMP_AN:35628
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27613
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-Glucose anhydrous
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:42758) D-Glucose anhydrous
 +
|
 +
 
 +
*chemical concentration= 0.2%
 +
*normalized fitness= -9.6
 +
|-
 +
|
 +
OMP_AN:35629
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27604
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 
 +
*chemical concentration= 0.4%
 +
*normalized fitness= -5.69
 +
|-
 +
|
 +
OMP_AN:35630
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27614
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Glycerol
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:17754) Glycerol
 +
|
 +
 
 +
*chemical concentration= 0.4%
 +
*normalized fitness= -5.69
 +
|-
 +
|
 +
OMP_AN:35631
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27605
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Maltose monohydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:23615261) D-(+) Maltose monohydrate
 +
|
 +
 
 +
*chemical concentration= 0.1%
 +
*normalized fitness= -5.64
 +
|-
 +
|
 +
OMP_AN:35632
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27615
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:D-(+) Maltose monohydrate
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CID:23615261) D-(+) Maltose monohydrate
 +
|
 +
 
 +
*chemical concentration= 0.1%
 +
*normalized fitness= -5.64
 +
|-
 +
|
 +
OMP_AN:35633
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27607
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -11.25
 +
|-
 +
|
 +
OMP_AN:35634
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:27617
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:M9
 +
*medium:Succinic acid
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:15741) Succinic acid
 +
|
 +
 
 +
*chemical concentration= 0.3%
 +
*normalized fitness= -11.25
 +
|-
 +
|
 +
OMP_AN:35635
 +
|
 +
 
 +
|
 +
OMP:0007075
 +
|
 +
decreased growth factor requirement
 +
|
 +
Relative to: OMP_AN:27599
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron starvation-FeSO4·7H2O
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
 +
|
 +
 
 +
*chemical concentration= 2uM (MOPS; normal 100uM)
 +
*normalized fitness= -7.88
 +
|-
 +
|
 +
OMP_AN:35636
 +
|
 +
 
 +
|
 +
OMP:0007937
 +
|
 +
decreased resistance to nutrient limitation
 +
|
 +
Relative to: OMP_AN:27609
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:MOPS
 +
*medium:Iron starvation-FeSO4·7H2O
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
 +
|
 +
 
 +
*chemical concentration= 2uM (MOPS; normal 100uM)
 +
*normalized fitness= -7.88
 +
|-
 +
|
 +
OMP_AN:35637
 +
|
 +
 
 +
|
 +
OMP:0007521
 +
|
 +
decreased population growth in high osmolarity
 +
|
 +
Relative to: OMP_AN:27595
 +
 
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +fepA721(del)  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:NaCl
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:26710) NaCl
 +
|
 +
 
 +
*chemical concentration=  450 mM
 +
*normalized fitness= -3.78
 +
 
 +
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Latest revision as of 02:26, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW5086

Synonyms

JW5086-3

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 fepA721(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:955

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +fepA721(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17122336[1]

OMP_AN:35620

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27601

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -6.67

OMP_AN:35621

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27611

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Sodium Acetate anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:32954) Sodium Acetate anhydrous

  • chemical concentration= 0.6%
  • normalized fitness= -6.67

OMP_AN:35622

OMP:0006037

increased resistance to macrolide

Relative to: OMP_AN:27518

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Azithromycin
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:2955) Azithromycin

  • chemical concentration= 1 ug/ml
  • normalized fitness= 3.5

OMP_AN:35623

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27606

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:N-Acetyl-D-glucosamine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:506227) N-Acetyl-D-glucosamine

  • chemical concentration= 0.15%
  • normalized fitness= -12.78

OMP_AN:35624

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27616

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:N-Acetyl-D-glucosamine
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:506227) N-Acetyl-D-glucosamine

  • chemical concentration= 0.15%
  • normalized fitness= -12.78

OMP_AN:35625

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27602

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Glucosamine hydrochloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:91431) D-(+) Glucosamine hydrochloride

  • chemical concentration= 0.2%
  • normalized fitness= -7.57

OMP_AN:35626

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27612

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Glucosamine hydrochloride
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:91431) D-(+) Glucosamine hydrochloride

  • chemical concentration= 0.2%
  • normalized fitness= -7.57

OMP_AN:35627

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27603

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -9.6

OMP_AN:35628

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27613

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-Glucose anhydrous
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:42758) D-Glucose anhydrous

  • chemical concentration= 0.2%
  • normalized fitness= -9.6

OMP_AN:35629

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27604

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= -5.69

OMP_AN:35630

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27614

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Glycerol
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:17754) Glycerol

  • chemical concentration= 0.4%
  • normalized fitness= -5.69

OMP_AN:35631

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27605

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Maltose monohydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23615261) D-(+) Maltose monohydrate

  • chemical concentration= 0.1%
  • normalized fitness= -5.64

OMP_AN:35632

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27615

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:D-(+) Maltose monohydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23615261) D-(+) Maltose monohydrate

  • chemical concentration= 0.1%
  • normalized fitness= -5.64

OMP_AN:35633

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27607

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -11.25

OMP_AN:35634

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:27617

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:M9
  • medium:Succinic acid
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:15741) Succinic acid

  • chemical concentration= 0.3%
  • normalized fitness= -11.25

OMP_AN:35635

OMP:0007075

decreased growth factor requirement

Relative to: OMP_AN:27599

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron starvation-FeSO4·7H2O
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O

  • chemical concentration= 2uM (MOPS; normal 100uM)
  • normalized fitness= -7.88

OMP_AN:35636

OMP:0007937

decreased resistance to nutrient limitation

Relative to: OMP_AN:27609

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:Iron starvation-FeSO4·7H2O
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O

  • chemical concentration= 2uM (MOPS; normal 100uM)
  • normalized fitness= -7.88

OMP_AN:35637

OMP:0007521

decreased population growth in high osmolarity

Relative to: OMP_AN:27595

Genotype differences:

+lacZ4787(del)( +fepA721(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:NaCl
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:26710) NaCl

  • chemical concentration= 450 mM
  • normalized fitness= -3.78
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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