OMP ST:74195 ! Escherichia coli K-12 JW5260

Strain Summary

Strain Name	Escherichia coli K-12 JW5260
Synonyms	JW5260-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ynfF736(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Showing 1 to 10 of 11 entries

Search all columns:

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:35922		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= 4.88
OMP_AN:35923		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= 4.88
OMP_AN:35924		OMP:0006037	increased resistance to macrolide	Relative to: OMP_AN:27518 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Azithromycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:2955) Azithromycin	chemical concentration= 1 ug/ml normalized fitness= 4.43
OMP_AN:35925		OMP:0006045	increased resistance to beta-lactam compound	Relative to: OMP_AN:27534 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefoxitin sodium hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3501) Cefoxitin sodium hydrate	chemical concentration= 0.25 ug/ml normalized fitness= 3.45
OMP_AN:35926		OMP:0006037	increased resistance to macrolide	Relative to: OMP_AN:27519 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Clarithromycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3732) Clarithromycin	chemical concentration= 5 ug/ml normalized fitness= 3.56
OMP_AN:35927		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 4 mM (LB) normalized fitness= -4.31
OMP_AN:35928		OMP:0007913	increased resistance to a chelator	Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:EDTA disodium salt dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758) EDTA disodium salt dihydrate	chemical concentration= 1 mM normalized fitness= 3.43
OMP_AN:35929		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= 3.6
OMP_AN:35930		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= 3.6
OMP_AN:35931		OMP:0007011	increased population growth at alkaline pH	Relative to: OMP_AN:27623 Genotype differences: +lacZ4787(del)( +ynfF736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:TAPS	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (**SID:24900259) TAPS	chemical concentration= 9.5 normalized fitness= 5.85

Showing 1 to 10 of 11 entries

Previous12Next

edit table

References

See Help:References for how to manage references in OMPwiki.