OMP ST:74075 ! Escherichia coli K-12 JW5089
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW5089 |
|---|---|
| Synonyms |
JW5089-2 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 lipB769(del)::FRT-kan-FRT |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:35641 |
OMP:0007959 |
increased population growth at low temperature |
Relative to: OMP_AN:27620 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences:
|
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
|
OMP_AN:35642 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:134107 CID:11546620) CHIR-090 |
| ||
|
OMP_AN:35643 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27585 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23679061) Cholate sodium hydrate |
| ||
|
OMP_AN:35644 |
OMP:0007912 |
decreased resistance to a chelator |
Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758) EDTA disodium salt dihydrate |
| ||
|
OMP_AN:35645 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:35646 |
OMP:0007071 |
increased organic carbon source utilization |
Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:35647 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:35648 |
OMP:0007071 |
increased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:35649 |
OMP:0006063 |
increased resistance to tetracycline |
Relative to: OMP_AN:27523 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:50697) Minocycline hydrochloride |
| ||
|
OMP_AN:35650 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27510 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:27504) Mitomycin C |
| ||
|
OMP_AN:35651 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:35652 |
OMP:0007033 |
increased utilization of inorganic nitrogen source |
Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:35653 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27574 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28786) Paraquat dichloride |
| ||
|
OMP_AN:35654 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27547 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:16240) Hydrogen peroxide |
| ||
|
OMP_AN:35655 |
OMP:0006040 |
decreased resistance to quinolone |
Relative to: OMP_AN:27543 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9287) Streptonigrin |
| ||
|
OMP_AN:35656 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27584 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23687511) Taurocholic acid sodium salt hydrate |
| ||
|
OMP_AN:35657 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27588 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:164200) Triclosan/Irgasan |
| ||
|
OMP_AN:35658 |
OMP:0007896 |
decreased resistance to a surfactant |
Relative to: OMP_AN:27583 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9750) Triton X-100 |
| ||
|
OMP_AN:35659 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27536 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3509) Ceftazidime hydrate |
| ||
|
OMP_AN:35660 |
OMP:0006063 |
increased resistance to tetracycline |
Relative to: OMP_AN:27522 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:34730) Doxycycline hyclate |
| ||
|
OMP_AN:35661 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:35662 |
OMP:0007936 |
increased resistance to nutrient limitation |
Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:35663 |
OMP:0007009 |
increased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES |
| ||
|
OMP_AN:35664 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27551 Genotype differences: +lacZ4787(del)( +lipB769(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28077) Rifampicin |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
o
- OMP:0006040 ! decreased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0006063 ! increased resistance to tetracycline
- OMP:0007009 ! increased growth at acidic pH
- OMP:0007033 ! increased utilization of inorganic nitrogen source
- OMP:0007071 ! increased organic carbon source utilization
- OMP:0007074 ! increased growth factor requirement
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007878 ! increased resistance to an antimicrobial agent
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007896 ! decreased resistance to a surfactant
- OMP:0007903 ! decreased resistance to bile acids
- OMP:0007912 ! decreased resistance to a chelator
- OMP:0007936 ! increased resistance to nutrient limitation
