OMP ST:73655 ! Escherichia coli K-12 JW3815
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW3815 |
|---|---|
| Synonyms |
JW3815-1 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 tatC781(del)::FRT-kan-FRT |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:34420 |
OMP:0007954 |
decreased population growth at high temperature |
Relative to: OMP_AN:27621 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences:
|
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
|
OMP_AN:34421 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27575 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride) |
| ||
|
OMP_AN:34422 |
OMP:0006045 |
increased resistance to beta-lactam compound |
Relative to: OMP_AN:27530 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2676) Amoxicillin |
| ||
|
OMP_AN:34423 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27531 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28971) Ampicillin |
| ||
|
OMP_AN:34424 |
OMP:0007927 |
decreased anaerobic population growth |
Relative to: OMP_AN:27618 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
|
OMP_AN:34425 |
OMP:0006037 |
increased resistance to macrolide |
Relative to: OMP_AN:27518 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2955) Azithromycin |
| ||
|
OMP_AN:34426 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27501 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:247956) Dibucaine |
| ||
|
OMP_AN:34427 |
OMP:0007912 |
decreased resistance to a chelator |
Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758) EDTA disodium salt dihydrate |
| ||
|
OMP_AN:34428 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27572 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG) |
| ||
|
OMP_AN:34429 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:34430 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:34431 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:34432 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:34433 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:34434 |
OMP:0007032 |
decreased utilization of inorganic nitrogen source |
Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:34435 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27580 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate |
| ||
|
OMP_AN:34436 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27570 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:51240) Propidium iodide |
| ||
|
OMP_AN:34437 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27573 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8431) Procaine hydrochloride |
| ||
|
OMP_AN:34438 |
OMP:0006057 |
decreased resistance to aminoglycoside |
Relative to: OMP_AN:27528 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32158) Streptomycin sulfate |
| ||
|
OMP_AN:34439 |
OMP:0006041 |
increased resistance to quinolone |
Relative to: OMP_AN:27543 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9287) Streptonigrin |
| ||
|
OMP_AN:34440 |
OMP:0007832 |
increased resistance to sulfonamide |
Relative to: OMP_AN:27577 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32164) Sulfamonomethoxine |
| ||
|
OMP_AN:34441 |
OMP:0007902 |
increased resistance to bile acids |
Relative to: OMP_AN:27584 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23687511) Taurocholic acid sodium salt hydrate |
| ||
|
OMP_AN:34442 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27588 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:164200) Triclosan/Irgasan |
| ||
|
OMP_AN:34443 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27560 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16219032) Bacitracin Zinc Sulfate |
| ||
|
OMP_AN:34444 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27589 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam |
| ||
|
OMP_AN:34445 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27536 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3509) Ceftazidime hydrate |
| ||
|
OMP_AN:34446 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:34447 |
OMP:0007937 |
decreased resistance to nutrient limitation |
Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:34448 |
OMP:0006040 |
decreased resistance to quinolone |
Relative to: OMP_AN:27542 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:100246) Norfloxacin |
| ||
|
OMP_AN:34449 |
OMP:0007011 |
increased population growth at alkaline pH |
Relative to: OMP_AN:27623 Genotype differences: +lacZ4787(del)( +tatC781(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:24900259) TAPS |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
o
- OMP:0006037 ! increased resistance to macrolide
- OMP:0006040 ! decreased resistance to quinolone
- OMP:0006041 ! increased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0006045 ! increased resistance to beta-lactam compound
- OMP:0006057 ! decreased resistance to aminoglycoside
- OMP:0007011 ! increased growth at alkaline pH
- OMP:0007032 ! decreased utilization of inorganic nitrogen source
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007075 ! decreased growth factor requirement
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007832 ! increased resistance to sulfonamide
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
- OMP:0007902 ! increased resistance to bile acids
- OMP:0007912 ! decreased resistance to a chelator
- OMP:0007927 ! decreased anaerobic population growth
- OMP:0007937 ! decreased resistance to nutrient limitation
