OMP ST:72889 ! Escherichia coli K-12 JW2541
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW2541 |
|---|---|
| Synonyms |
JW2541-1 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 purL731(del)::FRT-kan-FRT |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:32040 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:32041 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:32042 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27530 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2676) Amoxicillin |
| ||
|
OMP_AN:32043 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27552 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:10110) Azidothymidine |
| ||
|
OMP_AN:32044 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177) |
| ||
|
OMP_AN:32045 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27571 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) |
| ||
|
OMP_AN:32046 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:134107 CID:11546620) CHIR-090 |
| ||
|
OMP_AN:32047 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27519 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3732) Clarithromycin |
| ||
|
OMP_AN:32048 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9177) Deoxycholate sodium |
| ||
|
OMP_AN:32049 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:32050 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:32051 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:32052 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:32053 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:32054 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:32055 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:32056 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:32057 |
OMP:0007174 |
increased resistance to a host defense peptide |
Relative to: OMP_AN:27563 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (UniProtKB:P33046) Indolicidin |
| ||
|
OMP_AN:32058 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:32059 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:32060 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:32061 |
OMP:0007032 |
decreased utilization of inorganic nitrogen source |
Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:32062 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27503 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:71415) Nitrofurantoin |
| ||
|
OMP_AN:32063 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27574 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28786) Paraquat dichloride |
| ||
|
OMP_AN:32064 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27607 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:32065 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27617 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:32066 |
OMP:0007895 |
increased resistance to a surfactant |
Relative to: OMP_AN:27583 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9750) Triton X-100 |
| ||
|
OMP_AN:32067 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27532 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:161680) Aztreonam |
| ||
|
OMP_AN:32068 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27560 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16219032) Bacitracin Zinc Sulfate |
| ||
|
OMP_AN:32069 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27598 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:32070 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27608 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:32071 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:32072 |
OMP:0007937 |
decreased resistance to nutrient limitation |
Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:32073 |
OMP:0007009 |
increased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES |
| ||
|
OMP_AN:32074 |
OMP:0007008 |
decreased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES |
| ||
|
OMP_AN:32075 |
OMP:0007010 |
decreased population growth at alkaline pH |
Relative to: OMP_AN:27623 Genotype differences: +lacZ4787(del)( +purL731(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (**SID:24900259) TAPS |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 2.30 2.31 2.32 2.33 2.34 2.35 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
o
- OMP:0006036 ! decreased resistance to macrolide
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0007008 ! decreased growth at acidic pH
- OMP:0007009 ! increased growth at acidic pH
- OMP:0007010 ! decreased growth at alkaline pH
- OMP:0007032 ! decreased utilization of inorganic nitrogen source
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007075 ! decreased growth factor requirement
- OMP:0007174 ! increased resistance to antimicrobial peptide
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
- OMP:0007895 ! increased resistance to a surfactant
- OMP:0007903 ! decreased resistance to bile acids
- OMP:0007937 ! decreased resistance to nutrient limitation
