OMP ST:71033 ! Escherichia coli K-12 BW25113 lpxB::SPA-kan

Strain Summary

Strain Name	Escherichia coli K-12 BW25113 lpxB::SPA-kan
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 lpxB::SPA-kan
Strain Reference	PMID:21185072
Strain availability
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:37436		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +lpxB -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 1 mM (LB) normalized fitness= -3.75
OMP_AN:37437		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27515 Genotype differences: +lacZ4787(del)( +lpxB -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Fusidic acid sodium salt	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:126963539) Fusidic acid sodium salt	chemical concentration= 1 ug/ml normalized fitness= -3.92
OMP_AN:37438		OMP:0006040	decreased resistance to quinolone	Relative to: OMP_AN:27539 Genotype differences: +lacZ4787(del)( +lpxB -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Ciprofloxacin hydrochloride hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate	chemical concentration= 0.008 ug/ml normalized fitness= -3.35
OMP_AN:37439		OMP:0006040	decreased resistance to quinolone	Relative to: OMP_AN:27542 Genotype differences: +lacZ4787(del)( +lpxB -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Norfloxacin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:100246) Norfloxacin	chemical concentration= 0.04 ug/ml normalized fitness= -4.12
OMP_AN:37440		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27500 Genotype differences: +lacZ4787(del)( +lpxB -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Trimethoprim	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:45924) Trimethoprim	chemical concentration= 0.3 ug/ml normalized fitness= 3.38
edit table

References

See Help:References for how to manage references in OMPwiki.