OMP ST:71029 ! Escherichia coli K-12 BW25113 bamA66-kan
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 BW25113 bamA66-kan |
|---|---|
| Synonyms |
ECK0176-C-YAET(R64DEL)-KAN-Allele (Nichols et al. 2011. Supplemental Table S2) |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 bamA66-kan |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
The change in bamA66 is the deletion of the codon for amino acid residue R64, which lies in the POTRA 1 domain.[2]
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:37153 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27518 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2955) Azithromycin |
| ||
|
OMP_AN:37154 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:134107 CID:11546620) CHIR-090 |
| ||
|
OMP_AN:37155 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27548 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:171741) Cerulenin |
| ||
|
OMP_AN:37156 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27514 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3649) Chlorpromazine hydrochloride |
| ||
|
OMP_AN:37157 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27501 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:247956) Dibucaine |
| ||
|
OMP_AN:37158 |
OMP:0007912 |
decreased resistance to a chelator |
Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758) EDTA disodium salt dihydrate |
| ||
|
OMP_AN:37159 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27545 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:6030) Isoniazid |
| ||
|
OMP_AN:37160 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27580 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate |
| ||
|
OMP_AN:37161 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27503 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:71415) Nitrofurantoin |
| ||
|
OMP_AN:37162 |
OMP:0007896 |
decreased resistance to a surfactant |
Relative to: OMP_AN:27582 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8984) SDS |
| ||
|
OMP_AN:37163 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27567 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28177) Theophylline anhydrous |
| ||
|
OMP_AN:37164 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27516 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:445629) Thiolactomycin |
| ||
|
OMP_AN:37165 |
OMP:0006058 |
increased resistance to aminoglycoside |
Relative to: OMP_AN:27529 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28864) Tobramycin |
| ||
|
OMP_AN:37166 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27504 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31924) Novobiocin sodium salt |
| ||
|
OMP_AN:37167 |
OMP:0005098 |
decreased resistance to UV radiation |
Relative to: OMP_AN:27619 Genotype differences: +lacZ4787(del)( +bamA66-kan -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
| |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
- ↑ Bennion, D et al. (2010) Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli. Mol. Microbiol. 77 1153-71 PubMed OMPwiki page
o
- OMP:0005098 ! decreased resistance to UV radiation
- OMP:0006036 ! decreased resistance to macrolide
- OMP:0006058 ! increased resistance to aminoglycoside
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007878 ! increased resistance to an antimicrobial agent
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
- OMP:0007896 ! decreased resistance to a surfactant
- OMP:0007912 ! decreased resistance to a chelator
