OMP ST:6171 ! Escherichia coli K-12 JW5165

Strain Summary

Strain Name	Escherichia coli K-12 JW5165
Synonyms	JW5165-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 hflD720(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1285		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +hflD720(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:1286		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:882 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +hflD720(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:35781		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27514 Genotype differences: +lacZ4787(del)( +hflD720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Chlorpromazine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3649) Chlorpromazine hydrochloride	chemical concentration= 6 uM normalized fitness= -3.54
OMP_AN:35782		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27596 Genotype differences: +lacZ4787(del)( +hflD720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefaclor	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3478) Cefaclor	chemical concentration= 3 ug/ml normalized fitness= -3.63
OMP_AN:35783		OMP:0006063	increased resistance to tetracycline	Relative to: OMP_AN:27522 Genotype differences: +lacZ4787(del)( +hflD720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Doxycycline hyclate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:34730) Doxycycline hyclate	chemical concentration= 1 ug/ml normalized fitness= 3.32
OMP_AN:35784		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +hflD720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron starvation-FeSO4·7H2O	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O	chemical concentration= 2uM (MOPS; normal 100uM) normalized fitness= -3.45
OMP_AN:35785		OMP:0007937	decreased resistance to nutrient limitation	Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +hflD720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron starvation-FeSO4·7H2O	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O	chemical concentration= 2uM (MOPS; normal 100uM) normalized fitness= -3.45
edit table

References

See Help:References for how to manage references in OMPwiki.