OMP ST:1287 ! Escherichia coli K-12 JW3587

Strain Summary

Strain Name	Escherichia coli K-12 JW3587
Synonyms	JW3587-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 gpmM724(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Notes

Gene gpmM referred to by its old name (gpmI) in PMID:17122336

Phenotype Annotation

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Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1124		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +gpmM724(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:33739		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27559 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Actinomycin D	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:27666 CID:457193) Actinomycin D	chemical concentration= 5 ug/ml normalized fitness= -3.53
OMP_AN:33740		OMP:0007895	increased resistance to a surfactant	Relative to: OMP_AN:27581 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Benzalkonium chloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3020) Benzalkonium chloride	chemical concentration= 1 ug/ml normalized fitness= 3.55
OMP_AN:33741		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27561 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bleomycin sulfate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:34582) Bleomycin sulfate	chemical concentration= 0.1 ug/ml normalized fitness= -3.92
OMP_AN:33742		OMP:0007888	increased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 2 mM (LB) normalized fitness= 3.56
OMP_AN:33743		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Deoxycholate sodium	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:9177) Deoxycholate sodium	chemical concentration= 2 % normalized fitness= -3.57
OMP_AN:33744		OMP:0007912	decreased resistance to a chelator	Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:EDTA disodium salt dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758) EDTA disodium salt dihydrate	chemical concentration= 1 mM normalized fitness= -5.33
OMP_AN:33745		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27572 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Epigallocatechin gallate (EGCG)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)	chemical concentration= 50 uM normalized fitness= 3.57
OMP_AN:33746		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27513 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Phenazine methosulfate (PMS)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:8055) Phenazine methosulfate (PMS)	chemical concentration= 0.02 mM normalized fitness= 3.42
OMP_AN:33747		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27564 Genotype differences: +lacZ4787(del)( +gpmM724(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Phleomycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75044) Phleomycin	chemical concentration= 1 ug/ml normalized fitness= -4.02

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References

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