OMP ST:1171 ! Escherichia coli K-12 JW5599

Strain Summary

Strain Name	Escherichia coli K-12 JW5599
Synonyms	JW5599-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 rffD738(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1081		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffD738(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:1133		OMP:0005324	altered cell motility by swimming	Relative to: OMP_AN:882 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffD738(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:36485		OMP:0006061	decreased resistance to tetracycline	Relative to: OMP_AN:27523 Genotype differences: +lacZ4787(del)( +rffD738(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Minocycline hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:50697) Minocycline hydrochloride	chemical concentration= 1 ug/ml normalized fitness= -3.85
OMP_AN:36486		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27566 Genotype differences: +lacZ4787(del)( +rffD738(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Vancomycin HCl hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:9932) Vancomycin HCl hydrate	chemical concentration= 50 ug/ml normalized fitness= 3.52
OMP_AN:36487		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27598 Genotype differences: +lacZ4787(del)( +rffD738(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron excess-FeSO4 heptahydride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride	chemical concentration= 1mM (MOPS; normal 100uM) normalized fitness= -3.95
OMP_AN:36488		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27608 Genotype differences: +lacZ4787(del)( +rffD738(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron excess-FeSO4 heptahydride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride	chemical concentration= 1mM (MOPS; normal 100uM) normalized fitness= -3.95
OMP_AN:36489		OMP:0007520	increased population growth in high osmolarity	Relative to: OMP_AN:27595 Genotype differences: +lacZ4787(del)( +rffD738(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:NaCl	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:26710) NaCl	chemical concentration= 600 mM normalized fitness= 6.26
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References

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