OMP ST:71332 ! Escherichia coli K-12 JW0205

Strain Summary

Strain Name	Escherichia coli K-12 JW0205
Synonyms	JW0205-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 dnaQ744(del)::FRT-kan-FRT
Strain Reference	PMID:16738554^[1] Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Notes

Phenotype Annotation

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Annotation ID	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:28125	OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= -6.12
OMP_AN:28126	OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= -6.12
OMP_AN:28127	OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27575 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Acriflavine (acriflavinium chloride)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)	chemical concentration= 2 ug/ml normalized fitness= -6.79
OMP_AN:28128	OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	chemical concentration= 2 % normalized fitness= -3.94
OMP_AN:28129	OMP:0006045	increased resistance to beta-lactam compound	Relative to: OMP_AN:27534 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefoxitin sodium hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:3501) Cefoxitin sodium hydrate	chemical concentration= 0.75 ug/ml normalized fitness= 4.18
OMP_AN:28130	OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27548 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cerulenin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:171741) Cerulenin	chemical concentration= 1 ug/ml normalized fitness= 3.6
OMP_AN:28131	OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 4 mM (LB) normalized fitness= -4.24
OMP_AN:28132	OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27572 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Epigallocatechin gallate (EGCG)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)	chemical concentration= 50 uM normalized fitness= 5.45
OMP_AN:28133	OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -5.84
OMP_AN:28134	OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +dnaQ744(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072^[2]	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -5.84

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Jump up ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
↑ ^{Jump up to: 2.00} ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page

[PMID:16738554-1] Jump up ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page

[PMID:21185072-2] {Jump up to: 2.00} ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page

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OMP ST:71332 ! Escherichia coli K-12 JW0205

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Strain Summary

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Phenotype Annotation

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