OMP ST:6326 ! Escherichia coli UPEC CFT073
Contents
Strain Summary
Strain Name |
Escherichia coli UPEC CFT073 |
---|---|
Synonyms | |
Taxon Information |
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Genotype | |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
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Notes
Phenotype Annotation
Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:7515 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
||||
OMP_AN:7516 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0000049 |
reporter gene assay evidence |
UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
OMP_AN:7517 |
OMP:0000029 |
presence of flagellum |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005033 |
electron microscopy evidence |
||||
OMP_AN:7518 |
OMP:0000215 |
decreased number of flagella |
Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)? |
|
ECO:0005033 |
electron microscopy evidence |
||||
OMP_AN:7519 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7520 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
OMP_AN:7521 |
OMP:0006100 |
abolished cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7522 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7523 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
OMP_AN:7524 |
OMP:0006167 |
abolished cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7525 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
|
|||
OMP_AN:7526 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
OMP_AN:7527 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
OMP_AN:7528 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
OMP_AN:7529 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000112 |
western blot evidence |
||||
OMP_AN:7530 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGRE (5%)? |
|
ECO:0000112 |
western blot evidence |
Pomegranate rind extract (PGRE) was tested | |||
OMP_AN:7531 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0000112 |
western blot evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
OMP_AN:7532 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGP (10%)? |
|
ECO:0000112 |
western blot evidence |
Pomegranate fruit powder (PGP) was tested | |||
OMP_AN:7534 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7535 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
OMP_AN:7536 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0005803 |
motility assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
OMP_AN:7537 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
OMP_AN:7538 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
OMP_AN:7539 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0005803 |
motility assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
OMP_AN:7540 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PGP (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
OMP_AN:7541 |
OMP:0000215 |
decreased number of flagella |
Relative to: OMP_AN:7569 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
OMP_AN:7543 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
||||||
OMP_AN:7544 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
CHEBI:28487 Reserpine (RES) |
|||||
OMP_AN:7545 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
CHEBI:28821 Piperine (PIP) |
|||||
OMP_AN:7546 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
CHEBI:28821 Piperine (PIP) |
|||||
OMP_AN:7547 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
CHEBI:28487 Reserpine (RES) |
|||||
OMP_AN:7548 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7570 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7549 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7570 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7550 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7572 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28821 Piperine (PIP) |
|||
NOT |
OMP:0005323 |
altered cell motility by swarming |
Relative to: OMP_AN:7551 Genotype differences: no differences Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7552 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
||||||
OMP_AN:7553 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2V815 motA |
|||
OMP_AN:7554 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2V815 motA CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7555 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7586 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
UniProtKB:A0A0H2V9E2 motB CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7556 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7587 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VGH0 fimA CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7557 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7588 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P66797 uvrY CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7558 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7589 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VAE3 fliC CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7559 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7590 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P62608 papA CHEBI:28821 Piperine (PIP) |
|||
OMP_AN:7563 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2V815 motA CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7564 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7586 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2V9E2 motB CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7565 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7587 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VGH0 fimA CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7566 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7588 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P66797 uvrY CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7567 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7590 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P62608 papA CHEBI:28487 Reserpine (RES) |
|||
OMP_AN:7568 |
NOT |
OMP:0007080 |
altered gene expression |
Relative to: OMP_AN:7589 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VAE3 fliC CHEBI:28487 Reserpine (RES) |
||
OMP_AN:7569 |
OMP:0000029 |
presence of flagellum |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005033 |
electron microscopy evidence |
||||
OMP_AN:7570 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7571 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7572 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7586 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2V9E2 motB |
|||
OMP_AN:7587 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VGH0 fimA |
|||
OMP_AN:7588 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P66797 uvrY |
|||
OMP_AN:7589 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:A0A0H2VAE3 fliC |
|||
OMP_AN:7590 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P62608 papA |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
- ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 3.15 3.16 3.17 3.18 3.19 3.20 3.21 3.22 3.23 3.24 3.25 3.26 3.27 3.28 3.29 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page
e
o
- OMP:0000029 ! presence of flagellum
- OMP:0000067 ! presence of motility by swarming
- OMP:0000111 ! presence of motility by swimming
- OMP:0000176 ! biofilm phenotype
- OMP:0000215 ! decreased number of flagella
- OMP:0000253 ! gene expression phenotype
- OMP:0000268 ! decreased gene expression
- OMP:0005323 ! altered cell motility by swarming
- OMP:0006100 ! abolished motility by swimming
- OMP:0006167 ! abolished motility by swarming
- OMP:0007020 ! increased biofilm formation
- OMP:0007080 ! altered gene expression
- OMP:0007092 ! decreased motility by swarming
- OMP:0007093 ! decreased cell motility by swimming