OMP ST:926 ! Escherichia coli K-12 JW5248
Contents
Strain Summary
| Strain Name |
Escherichia_coli_K-12_JW5248 |
|---|---|
| Synonyms |
BW25113 marR751(del)::kan, ECK1523 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 marR751(del)::kan |
| Strain Reference |
|
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:666 |
OMP:0006045 |
increased resistance to beta-lactam compound |
Relative to: OMP_AN:665 Genotype differences: +marR751(del) Condition differences: no differences |
medium:mecillinam (0.12 ug ml-1) |
CHEBI:51208 mecillinam |
fitness score = 6.61 | ||||
|
OMP_AN:667 |
OMP:0006068 |
increased resistance to chloramphenicol |
Relative to: OMP_AN:649 Genotype differences: +marR751(del) Condition differences: no differences |
medium:chloramphenicol (2.0 ug ml-1) |
CHEBI:17698 chloramphenicol |
fitness score = 5.13 | ||||
|
OMP_AN:669 |
OMP:0006063 |
increased resistance to tetracycline |
Relative to: OMP_AN:668 Genotype differences: +marR751(del) Condition differences: no differences |
medium:minocycline (1.0 ug ml-1) |
CHEBI:50694 minocycline |
fitness score = 4.89 | ||||
|
OMP_AN:671 |
OMP:0000334 |
increased resistance to aminopyrimidine |
Relative to: OMP_AN:670 Genotype differences: +marR751(del) Condition differences: no differences |
medium:trimethoprim (0.2 ug ml-1) |
CHEBI:45924 trimethoprim |
fitness score = 4.46 | ||||
|
OMP_AN:672 |
OMP:0006063 |
increased resistance to tetracycline |
Relative to: OMP_AN:647 Genotype differences: +marR751(del) Condition differences: no differences |
medium:tetracycline (1 ug ml-1) |
CHEBI:27902 tetracycline |
fitness score = 4.22 | ||||
|
OMP_AN:673 |
OMP:0006041 |
increased resistance to quinolone |
Relative to: OMP_AN:653 Genotype differences: +marR751(del) Condition differences: no differences |
medium:streptonigrin (0.5 ug ml-1) |
CHEBI:9287 streptonigrin |
fitness score = 4.09 | ||||
|
OMP_AN:675 |
OMP:0006063 |
increased resistance to tetracycline |
Relative to: OMP_AN:870 Genotype differences: +marR751(del) Condition differences: no differences |
medium:doxycycline (1.0 ug ml-1) |
CHEBI:50845 doxycycline |
fitness score = 4.03 | ||||
|
OMP_AN:676 |
OMP:0007384 |
increased resistance to a benzamide |
Relative to: OMP_AN:659 Genotype differences: +marR751(del) Condition differences: no differences |
medium:CHIR-090 (0.075 ug ml-1) |
PubChem CID:11546620 Chir-090 |
fitness score = 3.93 | ||||
|
OMP_AN:678 |
OMP:0006041 |
increased resistance to quinolone |
Relative to: OMP_AN:677 Genotype differences: +marR751(del) Condition differences: no differences |
medium:ciprofloxacin (0.004 ug ml-1) |
CHEBI:100241 ciprofloxacin |
fitness score = 3.70 | ||||
|
OMP_AN:680 |
OMP:0007171 |
resistant to antimicrobial peptide |
Relative to: OMP_AN:679 Genotype differences: +marR751(del) Condition differences: no differences |
medium:bleomycin (0.5 ug ml-1) |
CHEBI:22907 bleomycin |
fitness score = 3.50 | ||||
|
OMP_AN:682 |
OMP:0006037 |
increased resistance to macrolide |
Relative to: OMP_AN:681 Genotype differences: +marR751(del) Condition differences: no differences |
medium:azithromycin (1.0 ug ml-1) |
CHEBI:2955 azithromycin |
fitness score = 3.30 | ||||
|
OMP_AN:684 |
OMP:0006037 |
increased resistance to macrolide |
Relative to: OMP_AN:683 Genotype differences: +marR751(del) Condition differences: no differences |
medium:erythromycin (5.0 ug ml-1) |
CHEBI:48923 erythromycin |
fitness score = 3.29 | ||||
|
OMP_AN:686 |
OMP:0007136 |
resistant to alkaloid |
Relative to: OMP_AN:685 Genotype differences: +marR751(del) Condition differences: no differences |
medium:MMS (0.05%) |
CHEBI:25255 MMS |
fitness score = 8.56 | ||||
|
OMP_AN:688 |
OMP:0007362 |
Increased resistance to a nucleoside |
Relative to: OMP_AN:687 Genotype differences: +marR751(del) Condition differences: no differences |
medium:azidothymidine (1.0 ug ml-1) |
CHEBI:10110 azidothymidine |
fitness score = 3.73 | ||||
|
OMP_AN:690 |
OMP:0007249 |
Relative to: OMP_AN:689 Genotype differences: +marR751(del) Condition differences: no differences |
medium:propidium iodide (50 ug ml-1) |
CHEBI:51240 propidium iodide |
fitness score = 5.15 | |||||
|
OMP_AN:698 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:697 Genotype differences: +marR751(del) Condition differences: no differences |
medium:cefoxitin (0.5 ug ml-1) |
CHEBI:209807 cefoxitin |
fitness score = -3.14 | ||||
|
OMP_AN:700 |
OMP:0007219 |
decreased resistance to rifamycin |
Relative to: OMP_AN:699 Genotype differences: +marR751(del) Condition differences: no differences |
medium:rifampicin (2.0 ug ml-1) |
CHEBI:28077 rifampicin |
fitness score = -3.29 | ||||
|
OMP_AN:816 |
OMP:0005276 |
decreased resistance to organic heterocyclic compound |
Relative to: OMP_AN:815 Genotype differences: +marR751(del) Condition differences: no differences |
medium:A22 (15 ug ml-1) |
CID:16741200 A22 |
fitness score = -3.78 | ||||
|
OMP_AN:819 |
decreased resistance to organic aromatic compound |
Relative to: OMP_AN:817 Genotype differences: +marR751(del) Condition differences: no differences |
medium:procaine (30 ug ml-1) |
CHEBI:8430 procaine |
fitness score = -3.39 | |||||
|
OMP_AN:831 |
OMP:0007250 |
decreased sensitivity to a chemical |
Relative to: OMP_AN:827 Genotype differences: +marR751(del) Condition differences: no differences |
medium:ethanol (2.0 ug ml-1) |
CHEBI:16236 ethanol |
fitness score = -3.78 | ||||
|
OMP_AN:832 |
OMP:0007250 |
decreased sensitivity to a chemical |
Relative to: OMP_AN:828 Genotype differences: +marR751(del) Condition differences: no differences |
medium:bile 0.5% |
CHEBI:22868 bile |
fitness score = -3.51 | ||||
|
OMP_AN:833 |
OMP:0007250 |
decreased sensitivity to a chemical |
Relative to: OMP_AN:829 Genotype differences: +marR751(del) Condition differences: no differences |
medium:glycerol |
CHEBI:17754 glycerol |
fitness score = -3.45 | ||||
|
OMP_AN:834 |
OMP:0007250 |
decreased sensitivity to a chemical |
Relative to: OMP_AN:830 Genotype differences: +marR751(del) Condition differences: no differences |
medium:maltose |
CHEBI:17306 maltose |
fitness score = -3.05 | ||||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
o
- OMP:0000334 ! increased resistance to aminopyrimidine
- OMP:0005276 ! decreased resistance to organic heterocyclic compound
- OMP:0006037 ! increased resistance to macrolide
- OMP:0006041 ! increased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0006045 ! increased resistance to beta-lactam compound
- OMP:0006063 ! increased resistance to tetracycline
- OMP:0006068 ! increased resistance to chloramphenicol
- OMP:0007136 ! resistant to alkaloid
- OMP:0007171 ! resistant to antimicrobial peptide
- OMP:0007219 ! decreased resistance to rifamycin
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007362 ! Increased resistance to a nucleoside
- OMP:0007384 ! increased resistance to a benzamide
- OMP ST:800 ! Strain:Escherichia coli K-12 BW25113 derivatives
