OMP ST:867 ! Escherichia coli K-12 RP437

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Revision as of 14:55, 13 July 2016 by Cassandra-wilson (talk | contribs) (Table edited by Cassandra-wilson via TableEdit)

Strain Summary

Strain Name

RP437

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F-, thr-1, araC14, leuB6(Am), fhuA31, lacY1, tsx-78, lambda-, eda-50, hisG4(Oc), rfbC1?, rpsL136(strR), xylA5, mtl-1, metF159(Am), thiE1

Strain Reference

PMID:7045071[1]

Strain availability

CGSC

Ancestry
Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:538

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:35C
  • medium:motility medium
  • medium:phenol (5 mM)
ECO:0000181

in vitro assay evidence

PMID:3025180[2]

CHEBI:15882 phenol

Need to check phenotype

OMP_AN:606

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:30C
  • medium:chemotaxis buffer
  • medium:thymine (20 mM)
ECO:0000181

in vitro assay evidence

PMID:18065551[3]

CHEBI:17821 thymine

Capillary assay

OMP_AN:607

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:30C
  • medium:chemotaxis buffer
  • medium:uracil (20 mM)
ECO:0000181

in vitro assay evidence

PMID:18065551[3]

CHEBI:17568 uracil

Capillary assay

OMP_AN:608

OMP:0000054

absence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:30C
  • medium:chemotaxis buffer
  • medium:cytosine (20 mM)
ECO:0000181

in vitro assay evidence

PMID:18065551[3]

CHEBI:16040 cytosine

Capillary assay

OMP_AN:728

OMP:0000005

presence of cell motility

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • pH:5.5 and 7
  • medium:Motility buffer
ECO:0000181

in vitro assay evidence

PMID:7045071[1]

Light Microscopy



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. 1.0 1.1 Parkinson, JS & Houts, SE (1982) Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions. J. Bacteriol. 151 106-13 PubMed OMPwiki page
  2. Imae, Y et al. (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J. Bacteriol. 169 371-9 PubMed OMPwiki page
  3. 3.0 3.1 3.2 Liu, X & Parales, RE (2008) Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. J. Bacteriol. 190 972-9 PubMed OMPwiki page