OMP ST:800 ! Escherichia coli K-12 BW25113

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Revision as of 15:17, 20 June 2016 by Kylliechang (talk | contribs) (Table edited by Kylliechang via TableEdit)

Strain Summary

Strain Name

BW25113

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: Taxon: K-12
  • NCBI Taxonomy ID: NCBI Taxon ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1

Strain Reference
Strain availability

CGSC

Ancestry

ancestor:W1485

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:114

OMP:0005032

presence of stress induced mutagenesis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:Minimal A medium
  • medium:P-Gal
  • medium:X-Gal
  • medium:glycerol
 ECO:0000182

in vitro culture assay evidence

PMID:23224554[3]

papillation assay

OMP_AN:647

OMP:0006064

not resistant to tetracycline

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:tetracycline (1 ug ml-1)

PMID:21185072[4]

CHEBI:27902 tetracycline

OMP_AN:649

OMP:0006069

not resistant to chloramphenicol

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:chloramphenicol (2.0 ug ml-1)

PMID:21185072[4]

CHEBI:17698 chloramphenicol

OMP_AN:653

OMP:0006042

not resistant to quinolone

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:streptonigrin (0.5 ug ml-1)

PMID:21185072[4]

CHEBI:9287 streptonigrin

OMP_AN:655

OMP:0006064

not resistant to tetracycline

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:minocycline (0.5 ug ml-1)

PMID:21185072[4]

CHEBI:50694 minocycline

OMP_AN:657

OMP:0006059

not resistant to aminoglycoside

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:puromycin (25 ug ml-1)

PMID:21185072[4]

CHEBI:17939 puromycin

OMP_AN:659

not resistant to benzamide

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:CHIR-090 (0.075 ug ml-1)

PubChem CID:11546620 Chir-090

Term request was submitted for benzamide.

OMP_AN:661

OMP:0006046

not resistant to beta-lactam

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:mecillinam (0.09 ug ml-1)

PMID:21185072[4]

CHEBI:51208 mecillinam

OMP_AN:663

not resistant to acriflavine

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:acriflavine (10 ug ml-1)

PMID:21185072[4]

CHEBI:74728 acriflavinium chloride

Term request was submitted for acriflavine (acriflavinium chloride).

OMP_AN:665

OMP:0006046

not resistant to beta-lactam

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:mecillinam (0.12 ug ml-1)

PMID:21185072[4]

CHEBI:51208 mecillinam

OMP_AN:668

OMP:0006064

not resistant to tetracycline

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:minocycline (1.0 ug ml-1)

PMID:21185072[4]

CHEBI:50694 minocycline

OMP_AN:670

OMP:0000436

not resistant to aminopyrimidine

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:trimethoprim (0.2 ug ml-1)

PMID:21185072[4]

CHEBI:45924 trimethoprim

OMP_AN:674

OMP:0006064

not resistant to tetracycline

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:doxycyline (1.0 ug ml-1)

PMID:21185072[4]

CHEBI:50845 doxycycline


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Datsenko, KA & Wanner, BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97 6640-5 PubMed OMPwiki page
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
  3. ↑ Al Mamun, AA et al. (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 338 1344-8 PubMed OMPwiki page
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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