OMP ST:806 ! Escherichia coli K-12 W3110

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Revision as of 12:20, 11 December 2015 by Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit)

Strain Summary

Strain Name

W3110

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- IN(rrnD-rrnE)1 Lambda- rph-1

Strain Reference

other:CGSC

Strain availability

CGSC

Ancestry
Annotated phenotypes


Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:116

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:35C
  • medium:semisolid galactose agar
ECO:0000182

in vitro culture assay evidence

PMID:4916925[1]

CHEBI:12936

OMP_AN:237

OMP:0006024

heterotrophic

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:35C
  • medium:semisolid galactose agar
ECO:0000182

in vitro culture assay evidence

PMID:4916925[1]

CHEBI:12936

OMP_AN:510

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:37C
  • medium:chemotaxis medium
  • medium:serine (1 mM)
ECO:0000181

in vitro assay evidence

PMID:366075[2]

CHEBI:17822 serine

Capillary assay

OMP_AN:511

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:37C
  • medium:aspartic acid (3 mM)
  • medium:chemotaxis medium
ECO:0000181

in vitro assay evidence

PMID:366075[2]

CHEBI: 22660 aspartic acid

Capillary assay

OMP_AN:512

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:37C
  • medium:chemotaxis medium
  • medium:galactose (0.1 mM)
ECO:0000181

in vitro assay evidence

PMID:366075[2]

CHEBI:28260 galactose

Capillary assay

OMP_AN:513

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:510


Genotype differences:

no differences


Condition differences:

medium:levorphanol (1.1 mM)?

  • temperature:37C
  • medium:chemotaxis medium
  • medium:levorphanol (1.1 mM)
  • medium:serine (1 mM)
ECO:0000181

in vitro assay evidence

PMID:366075[2]

CHEBI:17822 serine CHEBI:6444 levorphanol

Capillary assay

OMP_AN:514

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:511


Genotype differences:

no differences


Condition differences:

medium:levorphanol (1.3 mM)?

  • temperature:37C
  • medium:aspartic acid (3 mM)
  • medium:chemotaxis medium
  • medium:levorphanol (1.3 mM)
ECO:0000181

in vitro assay evidence

PMID:366075[2]

CHEBI:22660 aspartic acid CHEBI:6444 levorphanol

Capillary assay



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. 1.0 1.1 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page
  2. 2.0 2.1 2.2 2.3 2.4 Persky-Brosh, S et al. (1978) Effect of morphine analogues on chemotaxis in Escherichia coli. J. Gen. Microbiol. 107 53-8 PubMed OMPwiki page