OMP ST:71189 ! Escherichia coli K-12 GSO214

Strain Summary

Strain Name	Escherichia coli K-12 GSO214
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	F- Lambda- rph-1 ybhU(del)::FRT-kan-FRT
Strain Reference	PMID:19734312
Strain availability
Ancestry	parent:OMP ST:159 ! Escherichia coli K-12 MG1655
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:36959		OMP:0007902	increased resistance to bile acids	Relative to: OMP_AN:27587 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	chemical concentration= 2 % normalized fitness= 3.19
OMP_AN:36960		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27561 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bleomycin sulfate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:34582) Bleomycin sulfate	chemical concentration= 0.5 ug/ml normalized fitness= -4.56
OMP_AN:36961		OMP:0006045	increased resistance to beta-lactam compound	Relative to: OMP_AN:27534 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefoxitin sodium hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3501) Cefoxitin sodium hydrate	chemical concentration= 0.5 ug/ml normalized fitness= 3.47
OMP_AN:36962		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27548 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cerulenin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:171741) Cerulenin	chemical concentration= 4 ug/ml normalized fitness= 4.35
OMP_AN:36963		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27509 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cisplatin-cis-Diamineplatinum(II) dichloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride	chemical concentration= 100 ug/ml normalized fitness= 5.22
OMP_AN:36964		OMP:0006037	increased resistance to macrolide	Relative to: OMP_AN:27519 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Clarithromycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3732) Clarithromycin	chemical concentration= 1 ug/ml normalized fitness= 3.68
OMP_AN:36965		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27501 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Dibucaine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:247956) Dibucaine	chemical concentration= 0.8 mM normalized fitness= 4.6
OMP_AN:36966		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27572 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Epigallocatechin gallate (EGCG)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)	chemical concentration= 5 uM normalized fitness= 4.57
OMP_AN:36967		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27515 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Fusidic acid sodium salt	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:126963539) Fusidic acid sodium salt	chemical concentration= 5 ug/ml normalized fitness= 3.76
OMP_AN:36968		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -2.99
OMP_AN:36969		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +ybhU(del) -DE(araD-araB)567 -DE(rhaD-rhaB)568 -hsdR514 -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -2.99
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References

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