OMP ST:1142 ! Escherichia coli K-12 JW5646

Strain Summary

Strain Name	Escherichia coli K-12 JW5646
Synonyms	JW5646-3
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 envC725(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1058		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +envC725(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:36591		OMP:0006045	increased resistance to beta-lactam compound	Relative to: OMP_AN:27530 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Amoxicillin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:2676) Amoxicillin	chemical concentration= 0.25 ug/ml normalized fitness= 4
OMP_AN:36592		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27531 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Ampicillin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:28971) Ampicillin	chemical concentration= 8 ug/ml normalized fitness= -5.48
OMP_AN:36593		OMP:0007895	increased resistance to a surfactant	Relative to: OMP_AN:27581 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Benzalkonium chloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3020) Benzalkonium chloride	chemical concentration= 1 ug/ml normalized fitness= 3.85
OMP_AN:36594		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:CHIR-090	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:134107 CID:11546620) CHIR-090	chemical concentration= 0.02 ug/ml normalized fitness= 5.08
OMP_AN:36595		OMP:0006037	increased resistance to macrolide	Relative to: OMP_AN:27519 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Clarithromycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3732) Clarithromycin	chemical concentration= 1 ug/ml normalized fitness= 4.14
OMP_AN:36596		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +envC725(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Deoxycholate sodium	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:9177) Deoxycholate sodium	chemical concentration= 2 % normalized fitness= -4.86
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References

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