OMP ST:1159 ! Escherichia coli K-12 JW5581

Strain Summary

Strain Name	Escherichia coli K-12 JW5581
Synonyms	JW5581-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ubiE778(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1075		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +ubiE778(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:36416		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27548 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cerulenin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:171741) Cerulenin	chemical concentration= 2 ug/ml normalized fitness= 4.23
OMP_AN:36417		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27503 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Nitrofurantoin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:71415) Nitrofurantoin	chemical concentration= 0.5 ug/ml normalized fitness= 4.27
OMP_AN:36418		OMP:0007902	increased resistance to bile acids	Relative to: OMP_AN:27584 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Taurocholic acid sodium salt hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23687511) Taurocholic acid sodium salt hydrate	chemical concentration= 1 % normalized fitness= 4.3
OMP_AN:36419		OMP:0006058	increased resistance to aminoglycoside	Relative to: OMP_AN:27529 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Tobramycin	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:28864) Tobramycin	chemical concentration= 0.05 ug/ml normalized fitness= 4.03
OMP_AN:36420		OMP:0007895	increased resistance to a surfactant	Relative to: OMP_AN:27583 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Triton X-100	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:9750) Triton X-100	chemical concentration= 0.03 % normalized fitness= 3.55
OMP_AN:36421		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27568 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:(±)-Verapamil hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:53188) (±)-Verapamil hydrochloride	chemical concentration= 0.1 mM normalized fitness= 4
OMP_AN:36422		OMP:0006045	increased resistance to beta-lactam compound	Relative to: OMP_AN:27536 Genotype differences: +lacZ4787(del)( +ubiE778(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Ceftazidime hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3509) Ceftazidime hydrate	chemical concentration= 0.05 ug/ml normalized fitness= 3.45
edit table

References

See Help:References for how to manage references in OMPwiki.