OMP ST:73766 ! Escherichia coli K-12 JW3993

Strain Summary

Strain Name	Escherichia coli K-12 JW3993
Synonyms	JW3993-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 malF729(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:34994		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27594 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)	chemical concentration= 0.5%/0.5mM %/0.5mM normalized fitness= -4.06
OMP_AN:34995		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27559 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Actinomycin D	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:27666 CID:457193) Actinomycin D	chemical concentration= 15 ug/ml normalized fitness= 3.98
OMP_AN:34996		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:CHIR-090	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:134107 CID:11546620) CHIR-090	chemical concentration= 0.025 ug/ml normalized fitness= -5.4
OMP_AN:34997		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27535 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefsulodin sodium salt hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31380) Cefsulodin sodium salt hydrate	chemical concentration= 12 ug/ml normalized fitness= -4.6
OMP_AN:34998		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 4 mM (LB) normalized fitness= -3.15
OMP_AN:34999		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27506 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Doxorubicin hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31522) Doxorubicin hydrochloride	chemical concentration= 10 ug/ml normalized fitness= 3.73
OMP_AN:35000		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -13.62
OMP_AN:35001		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +malF729(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -13.62
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References

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