OMP ST:73297 ! Escherichia coli K-12 JW3169

Strain Summary

Strain Name	Escherichia coli K-12 JW3169
Synonyms	JW3169-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 rpoN730(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:33124		OMP:0007959	increased population growth at low temperature	Relative to: OMP_AN:27620 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: temperature:16C medium37C medium	temperature:16C medium:LB agar medium:Low temperature	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072		chemical concentration= 16 C normalized fitness= 3.7
OMP_AN:33125		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27552 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Azidothymidine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:10110) Azidothymidine	chemical concentration= 0.5 ng/ml normalized fitness= -3.58
OMP_AN:33126		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27592 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)	chemical concentration= 50 ug/ml normalized fitness= -3.69
OMP_AN:33127		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27535 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefsulodin sodium salt hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31380) Cefsulodin sodium salt hydrate	chemical concentration= 24 ug/ml normalized fitness= -3.72
OMP_AN:33128		OMP:0007913	increased resistance to a chelator	Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:EDTA disodium salt dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758) EDTA disodium salt dihydrate	chemical concentration= 1 mM normalized fitness= 3.17
OMP_AN:33129		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= -4.03
OMP_AN:33130		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= -4.03
OMP_AN:33131		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -4.39
OMP_AN:33132		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -4.39
OMP_AN:33133		OMP:0006061	decreased resistance to tetracycline	Relative to: OMP_AN:27523 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Minocycline hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:50697) Minocycline hydrochloride	chemical concentration= 0.5 ug/ml normalized fitness= -3.29
OMP_AN:33134		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +rpoN730(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:NH4Cl	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31206) NH4Cl	chemical concentration= 9.5mm normalized fitness= -8.48
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References

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