OMP ST:1118 ! Escherichia coli K-12 JW2548

Strain Summary

Strain Name	Escherichia coli K-12 JW2548
Synonyms	JW2548-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 pdxJ736(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1034		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +pdxJ736(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:32081		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= -3.01
OMP_AN:32082		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= -3.01
OMP_AN:32083		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27535 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cefsulodin sodium salt hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31380) Cefsulodin sodium salt hydrate	chemical concentration= 18 ug/ml normalized fitness= -4.08
OMP_AN:32084		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -4.46
OMP_AN:32085		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -4.46
OMP_AN:32086		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.62
OMP_AN:32087		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +pdxJ736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.62
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References

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