OMP ST:6185 ! Escherichia coli K-12 JW2308

Strain Summary

Strain Name	Escherichia coli K-12 JW2308
Synonyms	JW2308-4
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ubiX732(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1313		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +ubiX732(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:1314		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:882 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +ubiX732(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:31453		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	chemical concentration= 0.5 % normalized fitness= -4.24
OMP_AN:31454		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27514 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Chlorpromazine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:3649) Chlorpromazine hydrochloride	chemical concentration= 6 uM normalized fitness= -7.49
OMP_AN:31455		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= 3.03
OMP_AN:31456		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= 3.03
OMP_AN:31457		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27590 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)	chemical concentration= 0.2 ug/ml (in 50 mg/ml G6P) normalized fitness= -4.16
OMP_AN:31458		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= 3.43
OMP_AN:31459		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +ubiX732(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= 3.43
edit table

References

See Help:References for how to manage references in OMPwiki.