OMP ST:72424 ! Escherichia coli K-12 JW1854

Strain Summary

Strain Name	Escherichia coli K-12 JW1854
Synonyms	JW1854-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 nudB720(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

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Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:30707		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 4 mM (LB) normalized fitness= -3.42
OMP_AN:30708		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -3.41
OMP_AN:30709		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -3.41
OMP_AN:30710		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= -4.04
OMP_AN:30711		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Glucosamine hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:91431) D-(+) Glucosamine hydrochloride	chemical concentration= 0.2% normalized fitness= -4.04
OMP_AN:30712		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.32
OMP_AN:30713		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.32
OMP_AN:30714		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -3.74
OMP_AN:30715		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -3.74
OMP_AN:30716		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +nudB720(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -5.17

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References

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