OMP ST:1133 ! Escherichia coli K-12 JW0626

Strain Summary

Strain Name	Escherichia coli K-12 JW0626
Synonyms	JW0626-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 ybeD770(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1049		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +ybeD770(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:28912		OMP:0007954	decreased population growth at high temperature	Relative to: OMP_AN:27621 Genotype differences: +lacZ4787(del)( +ybeD770(del) -lacZ4787(del) Condition differences: temperature:43.5C medium37C medium	temperature:43.5C medium:LB agar medium:High temperature	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072		chemical concentration= 43.5 C normalized fitness= -3.9
OMP_AN:28913		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27557 Genotype differences: +lacZ4787(del)( +ybeD770(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:A22	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:2830968) A22	chemical concentration= 5 ug/ml normalized fitness= 3.38
OMP_AN:28914		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +ybeD770(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)	chemical concentration= 0.1 % normalized fitness= -3.98
OMP_AN:28915		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27549 Genotype differences: +lacZ4787(del)( +ybeD770(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:CHIR-090	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:134107 CID:11546620) CHIR-090	chemical concentration= 0.075 ug/ml normalized fitness= -4.15
OMP_AN:28916		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27585 Genotype differences: +lacZ4787(del)( +ybeD770(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cholate sodium hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23679061) Cholate sodium hydrate	chemical concentration= 2 % normalized fitness= -3.63
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References

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