Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
Line 2,123: Line 2,123:
 
|
 
|
 
UniProtKB:Q8XA21 lsrF
 
UniProtKB:Q8XA21 lsrF
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7654
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7655
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7656
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7657
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7658
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7659
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7660
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7661
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7662
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7663
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7664
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7637
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7665
 +
|
 +
 +
|
 +
OMP:0000109
 +
|
 +
presence of mucoid colonies
 +
|
 +
Relative to: OMP_AN:7637
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:17992 sucrose
 
|
 
|
 
   
 
   

Revision as of 13:47, 12 December 2016

Strain Summary

Strain Name

Escherichia coli O157:H7 EDL933

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: O157:H7
  • NCBI Taxonomy ID: 83334
Genotype
Strain Reference
Strain availability

ATCC 43895

Ancestry
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Showing 1 to 10 of 80 entries
Annotation IDnotOMP IDOMP term nameRelative phenotype informationExperimental conditionECO IDECO term nameReferenceAnnotation ExtensionNotes

OMP_AN:7573

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:96 well plate
  • temperature:37C
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7574

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coladonin (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coladonin (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7575

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coumarin (0.5 ug./mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coumarin (0.5 ug./mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

Biofilm formation assay

OMP_AN:7576

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Umbelliferone (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Umbelliferone (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

Biofilm formation assay

OMP_AN:7577

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

OMP_AN:7578

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7579

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:Umbelliferone (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

OMP_AN:7580

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

OMP_AN:7581

NOT

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:7580

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7582

NOT

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:7580

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:Umbelliferone (50 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

Showing 1 to 10 of 80 entries
edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
  2. ↑ Jump up to: 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 2.30 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page
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