Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"
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*other:96-well plate | *other:96-well plate | ||
*temperature:37C | *temperature:37C | ||
| + | *medium:LB medium | ||
| + | | | ||
| + | ECO:0000181 | ||
| + | | | ||
| + | in vitro assay evidence | ||
| + | | | ||
| + | PMID:22047137 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | Crystal violet biofilm assay | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:7628 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0007026 | ||
| + | | | ||
| + | decreased biofilm formation | ||
| + | | | ||
| + | Relative to: OMP_AN:7627 | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | no differences | ||
| + | <hr>Condition differences:<br> | ||
| + | medium:>= Acacia honey (0.1 %)? | ||
| + | | | ||
| + | *other:96-well plate | ||
| + | *temperature:37C | ||
| + | *medium:>= Acacia honey (0.1 %) | ||
| + | *medium:LB medium | ||
| + | | | ||
| + | ECO:0000181 | ||
| + | | | ||
| + | in vitro assay evidence | ||
| + | | | ||
| + | PMID:22047137 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | Crystal violet biofilm assay | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:7629 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0007026 | ||
| + | | | ||
| + | decreased biofilm formation | ||
| + | | | ||
| + | Relative to: OMP_AN:7627 | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | no differences | ||
| + | <hr>Condition differences:<br> | ||
| + | other:>= Polyfloral honey (0.1 %)? | ||
| + | | | ||
| + | *other:>= Polyfloral honey (0.1 %) | ||
| + | *other:96-well plate | ||
| + | *temperature:37C | ||
| + | *medium:LB medium | ||
| + | | | ||
| + | ECO:0000181 | ||
| + | | | ||
| + | in vitro assay evidence | ||
| + | | | ||
| + | PMID:22047137 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | Crystal violet biofilm assay | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:7630 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0007026 | ||
| + | | | ||
| + | decreased biofilm formation | ||
| + | | | ||
| + | Relative to: OMP_AN:7627 | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | no differences | ||
| + | <hr>Condition differences:<br> | ||
| + | medium:>= Clover honey (0.1 %)? | ||
| + | | | ||
| + | *other:96-well plate | ||
| + | *temperature:37C | ||
| + | *medium:>= Clover honey (0.1 %) | ||
*medium:LB medium | *medium:LB medium | ||
| | | | ||
Revision as of 16:02, 7 December 2016
Contents
[hide]Strain Summary
| Strain Name |
Escherichia coli O157:H7 EDL933 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype | |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:7573 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
Biofilm formation assay | |||
|
OMP_AN:7574 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coladonin (0.5 ug/mL)? |
|
ECO:0000181 |
in vitro assay evidence |
Biofilm formation assay | |||
|
OMP_AN:7575 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coumarin (0.5 ug./mL)? |
|
ECO:0000181 |
in vitro assay evidence |
CHEBI:28794 Coumarin |
Biofilm formation assay | ||
|
OMP_AN:7576 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Umbelliferone (0.5 ug/mL)? |
|
ECO:0000181 |
in vitro assay evidence |
CHEBI:27510 Umbelliferone |
Biofilm formation assay | ||
|
OMP_AN:7577 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7578 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28794 Coumarin |
|||
|
OMP_AN:7579 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:27510 Umbelliferone |
|||
|
OMP_AN:7580 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7581 |
NOT |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28794 Coumarin |
||
|
OMP_AN:7582 |
NOT |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:27510 Umbelliferone |
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
- ↑ Jump up to: 2.0 2.1 2.2 2.3 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page
e
o
- OMP:0000028 ! decreased number of pili
- OMP:0000067 ! presence of motility by swarming
- OMP:0000084 ! pilus phenotype
- OMP:0000111 ! presence of motility by swimming
- OMP:0000176 ! biofilm phenotype
- OMP:0000253 ! gene expression phenotype
- OMP:0000267 ! increased gene expression
- OMP:0000268 ! decreased gene expression
- OMP:0005324 ! altered cell motility by swimming
- OMP:0007026 ! decreased biofilm formation
- OMP:0007080 ! altered gene expression
- OMP:0007092 ! decreased motility by swarming
