Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
Line 211: Line 211:
 
*temperature:37C
 
*temperature:37C
 
*medium:swarming motility medium
 
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:24837471
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7578
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7577
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Coumarin (50 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:Coumarin (50 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:24837471
 +
|
 +
CHEBI:28794 Coumarin
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7579
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7577
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Umbelliferone (50 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:Umbelliferone (50 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:24837471
 +
|
 +
CHEBI:27510 Umbelliferone
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7580
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swimming motility medium
 
|
 
|
 
ECO:0005803
 
ECO:0005803

Revision as of 14:38, 30 November 2016

Strain Summary

Strain Name

Escherichia coli O157:H7 EDL933

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: O157:H7
  • NCBI Taxonomy ID: 83334
Genotype
Strain Reference
Strain availability

ATCC 43895

Ancestry
Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7573

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:96 well plate
  • temperature:37C
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7574

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coladonin (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coladonin (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7575

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coumarin (0.5 ug./mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coumarin (0.5 ug./mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

Biofilm formation assay

OMP_AN:7576

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Umbelliferone (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Umbelliferone (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

Biofilm formation assay

OMP_AN:7577

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

OMP_AN:7578

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7579

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:Umbelliferone (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

OMP_AN:7580

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
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