Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"
Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
||
| Line 907: | Line 907: | ||
no differences | no differences | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | |||
medium:>= RES (0.5 ug/mL)? | medium:>= RES (0.5 ug/mL)? | ||
| | | | ||
| Line 941: | Line 940: | ||
medium:>= PIP (5 ug/mL)? | medium:>= PIP (5 ug/mL)? | ||
| | | | ||
| + | *other:96 well plate | ||
*temperature:37C | *temperature:37C | ||
*medium:>= PIP (5 ug/mL) | *medium:>= PIP (5 ug/mL) | ||
| Line 953: | Line 953: | ||
CHEBI:28821 Piperine (PIP) | CHEBI:28821 Piperine (PIP) | ||
| | | | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 1,132: | Line 1,132: | ||
| | | | ||
CHEBI:28487 Reserpine (RES) | CHEBI:28487 Reserpine (RES) | ||
| + | | | ||
| + | |||
| + | |- | ||
| + | | | ||
| + | OMP_AN:7552 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0000176 | ||
| + | | | ||
| + | biofilm phenotype | ||
| + | | | ||
| + | Relative to: | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | Nothing to compare<br/> | ||
| + | <hr>Condition differences:<br> | ||
| + | Nothing to compare<br/> | ||
| + | | | ||
| + | *other:Polystyrene tubes | ||
| + | *temperature:37C | ||
| + | *medium:LB broth | ||
| + | | | ||
| + | |||
| + | | | ||
| + | |||
| + | | | ||
| + | PMID:25391152 | ||
| + | | | ||
| + | |||
| | | | ||
Revision as of 15:20, 18 November 2016
Contents
Strain Summary
| Strain Name |
Escherichia coli UPEC CFT073 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype | |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:7515 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
||||
|
OMP_AN:7516 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0000049 |
reporter gene assay evidence |
UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7517 |
OMP:0000029 |
presence of flagellum |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005033 |
electron microscopy evidence |
||||
|
OMP_AN:7518 |
OMP:0000215 |
decreased number of flagella |
Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)? |
|
ECO:0005033 |
electron microscopy evidence |
||||
|
OMP_AN:7519 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7520 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7521 |
OMP:0006100 |
abolished cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7522 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7523 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7524 |
OMP:0006167 |
abolished cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7525 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
|
|||
|
OMP_AN:7526 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
|
OMP_AN:7527 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
|
OMP_AN:7528 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
|
OMP_AN:7529 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000112 |
western blot evidence |
||||
|
OMP_AN:7530 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGRE (5%)? |
|
ECO:0000112 |
western blot evidence |
Pomegranate rind extract (PGRE) was tested | |||
|
OMP_AN:7531 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0000112 |
western blot evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
|
OMP_AN:7532 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGP (10%)? |
|
ECO:0000112 |
western blot evidence |
Pomegranate fruit powder (PGP) was tested | |||
|
OMP_AN:7534 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7535 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
|
OMP_AN:7536 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0005803 |
motility assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
|
OMP_AN:7537 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
|
OMP_AN:7538 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
|
OMP_AN:7539 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PG (10%)? |
|
ECO:0005803 |
motility assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
|
OMP_AN:7540 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGP (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
|
OMP_AN:7541 |
OMP:0000215 |
decreased number of flagella |
Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)? |
|
ECO:0005803 |
motility assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
|
OMP_AN:7543 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
||||||
|
OMP_AN:7544 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
CHEBI:28487 Reserpine (RES) |
|||||
|
OMP_AN:7545 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
CHEBI:28821 Piperine (PIP) |
|||||
|
OMP_AN:7546 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
CHEBI:28821 Piperine (PIP) |
Polystyrene tubes were used to allow for biofilm formation | ||||
|
OMP_AN:7547 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL0? |
|
CHEBI:28487 Reserpine (RES) |
Polystyrene tubes were used to allow for biofilm formation | ||||
|
OMP_AN:7548 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28821 Piperine (PIP) |
|||
|
OMP_AN:7549 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28487 Reserpine (RES) |
|||
|
OMP_AN:7550 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28821 Piperine (PIP) |
|||
|
OMP_AN:7551 |
NOT |
OMP:0005323 |
altered cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28487 Reserpine (RES) |
||
|
OMP_AN:7552 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
| |||||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
- ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page
e
o
- OMP:0000029 ! presence of flagellum
- OMP:0000067 ! presence of motility by swarming
- OMP:0000111 ! presence of motility by swimming
- OMP:0000176 ! biofilm phenotype
- OMP:0000215 ! decreased number of flagella
- OMP:0000253 ! gene expression phenotype
- OMP:0000268 ! decreased gene expression
- OMP:0005323 ! altered cell motility by swarming
- OMP:0006100 ! abolished motility by swimming
- OMP:0006167 ! abolished motility by swarming
- OMP:0007020 ! increased biofilm formation
- OMP:0007092 ! decreased motility by swarming
- OMP:0007093 ! decreased cell motility by swimming
