Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
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OMP_AN:7530
 +
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 +
 +
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OMP:0000268
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decreased gene expression
 +
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Relative to: OMP_AN:7529
 +
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<hr>Genotype differences:<br>
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no differences
 +
<hr>Condition differences:<br>
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medium:>= PGRE (5%)?
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*temperature:37C
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*medium:>= PGRE (5%)
 +
*medium:LB medium
 +
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ECO:0000112
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western blot evidence
 +
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PMID:22708802
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UniProtKB:A0A0H2VAE3
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[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
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Pomegranate rind extract (PGRE) was tested
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OMP_AN:7531
 +
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 +
 +
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 +
OMP:0000268
 +
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 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7532
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
  
 
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Revision as of 14:12, 11 November 2016

Strain Summary

Strain Name

Escherichia coli UPEC CFT073

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: UPEC
  • NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability

ATCC 700928

Ancestry
Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7515

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3

OMP_AN:7516

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7515

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
  • medium:cPACs (0.1 mg/mL)
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7517

OMP:0000029

presence of flagellum

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

OMP_AN:7518

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7517

Genotype differences:

no differences

Condition differences:

medium:CP (10 mg/mL)?

  • temperature:37C
  • medium:CP (10 mg/mL)
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7519

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7520

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7521

OMP:0006100

abolished cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7522

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7523

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7524

OMP:0006167

abolished cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7525

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3


OMP_AN:7526

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PG (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PG (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7527

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGP (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGP (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7528

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGRE (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7529

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3

OMP_AN:7530

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (5%)?

  • temperature:37C
  • medium:>= PGRE (5%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7531

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:37C
  • medium:>= PG (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7532

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGP (10%)?

  • temperature:37C
  • medium:>= PGP (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
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