Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"
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no differences | no differences | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | medium: | + | medium:>= PG (1%)? |
| | | | ||
*other:p(PfliC)-lux | *other:p(PfliC)-lux | ||
*temperature:37C | *temperature:37C | ||
| − | *medium: | + | *medium:>= PG (1%) |
*medium:LB medium | *medium:LB medium | ||
| | | | ||
| Line 449: | Line 449: | ||
no differences | no differences | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | medium: | + | medium:>= PGP (1%)? |
| | | | ||
*other:p(PfliC)-lux | *other:p(PfliC)-lux | ||
*temperature:37C | *temperature:37C | ||
| − | *medium: | + | *medium:>= PGP (1%) |
*medium:LB medium | *medium:LB medium | ||
| | | | ||
| Line 481: | Line 481: | ||
no differences | no differences | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | medium: | + | medium:>= PGRE (1%)? |
| | | | ||
*other:p(PfliC)-lux | *other:p(PfliC)-lux | ||
*temperature:37C | *temperature:37C | ||
| − | *medium: | + | *medium:>= PGRE (1%) |
*medium:LB medium | *medium:LB medium | ||
| | | | ||
Revision as of 13:54, 11 November 2016
Contents
Strain Summary
| Strain Name |
Escherichia coli UPEC CFT073 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype | |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:7515 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
||||
|
OMP_AN:7516 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0000049 |
reporter gene assay evidence |
UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7517 |
OMP:0000029 |
presence of flagellum |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005033 |
electron microscopy evidence |
||||
|
OMP_AN:7518 |
OMP:0000215 |
decreased number of flagella |
Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)? |
|
ECO:0005033 |
electron microscopy evidence |
||||
|
OMP_AN:7519 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7520 |
OMP:0007093 |
decreased cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7521 |
OMP:0006100 |
abolished cell motility by swimming |
Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7522 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7523 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs) |
|||
|
OMP_AN:7524 |
OMP:0006167 |
abolished cell motility by swarming |
Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)? |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7525 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000049 |
reporter gene assay evidence |
|
|||
|
OMP_AN:7526 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Punicalagin (PG) is found in pomegranate tannins | |||
|
OMP_AN:7527 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate fruit powder (PGP) was tested | |||
|
OMP_AN:7528 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)? |
|
ECO:0000049 |
reporter gene assay evidence |
Pomegranate rind extract (PGRE) was tested | |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
- ↑ 2.0 2.1 2.2 2.3 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
e
o
- OMP:0000029 ! presence of flagellum
- OMP:0000067 ! presence of motility by swarming
- OMP:0000111 ! presence of motility by swimming
- OMP:0000215 ! decreased number of flagella
- OMP:0000253 ! gene expression phenotype
- OMP:0000268 ! decreased gene expression
- OMP:0006100 ! abolished motility by swimming
- OMP:0006167 ! abolished motility by swarming
- OMP:0007092 ! decreased motility by swarming
- OMP:0007093 ! decreased cell motility by swimming
