Difference between revisions of "OMP ST:908 ! AW659"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
 
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:632
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:630
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-12 +tar  -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:25C
 +
*medium:glycerol (1M)
 +
*medium:motility medium
 +
|
 +
ECO:0000181
 +
|
 +
in vitro assay evidence
 +
|
 +
PMID:6339465
 +
|
 +
CHEBI:17754 glycerol
 +
|
 +
Tethered cell assay
 +
|-
 +
|
 +
OMP_AN:633
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:631
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-12 +tar  -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:25C
 +
*medium:ethylene glycol (1M)
 +
*medium:motility medium
 +
|
 +
ECO:0000181
 +
|
 +
in vitro assay evidence
 +
|
 +
PMID:6339465
 +
|
 +
CHEBI:30742 ethylene glycol
 +
|
 +
Tethered cell assay
  
 
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|- class="tableEdit_footer"  

Latest revision as of 15:09, 26 April 2016

Strain Summary

Strain Name

AW659

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: Taxon: K-12
  • NCBI Taxonomy ID: 83333
Genotype

tsr-12 tar

Strain Reference

PMID:6339465[1]

Strain availability
Ancestry
  • parent (recipient):AW656
  • parent (donor):AW648
Annotated phenotypes




Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:632

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:630


Genotype differences:

+tsr-12 +tar -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5


Condition differences:

no differences

  • temperature:25C
  • medium:glycerol (1M)
  • medium:motility medium
ECO:0000181

in vitro assay evidence

PMID:6339465[1]

CHEBI:17754 glycerol

Tethered cell assay

OMP_AN:633

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:631


Genotype differences:

+tsr-12 +tar -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5


Condition differences:

no differences

  • temperature:25C
  • medium:ethylene glycol (1M)
  • medium:motility medium
ECO:0000181

in vitro assay evidence

PMID:6339465[1]

CHEBI:30742 ethylene glycol

Tethered cell assay



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. 1.0 1.1 1.2 Oosawa, K & Imae, Y (1983) Glycerol and ethylene glycol: members of a new class of repellents of Escherichia coli chemotaxis. J. Bacteriol. 154 104-12 PubMed OMPwiki page