Category:Strain:Escherichia coli K-12 JC3890: Difference between revisions

From OMPwiki
Jump to navigationJump to search
← Older editNewer edit →
Table edited by Tkveton via TableEdit
touch table
Line 56: Line 56:
PMID:334628
PMID:334628
|-
|-
!align=left align='left' bgcolor='#CCCCFF' |Source
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
||
[http://cgsc.biology.yale.edu/StrainQuery.php CGSC# 3890]
[http://cgsc.biology.yale.edu/StrainQuery.php CGSC# 3890]
Line 69: Line 69:


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5968.H5570b868e1969&page=5968&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</span> ||
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5968.H5570b868e1969&page=5968&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
|}
<noinclude>
<noinclude>
 
<!-- OMP category tags -->[[Category:Strains that need OMP_ST accessions]]
</noinclude>
</noinclude>
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5968.H5570b868e1969--></protect>
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5968.H5570b868e1969--></protect>
Line 87: Line 87:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U5570b868e4b3a"  class=" tableEdit OMP_annotation_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U5570b868e4b3a"  class=" tableEdit OMP_annotation_table dataTable"   
|- align='left' bgcolor='#CCCCFF'
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
Line 100: Line 100:
decreased resistance to UV-A radiation
decreased resistance to UV-A radiation
|
|
Relative to:OMP_AN:52
Relative to: OMP_AN:52
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:(bioA-moaA)301(del) <br/><br>
+other:DE(bioA-moaA)301
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
|
|
Line 129: Line 129:
decreased resistance to UV-A radiation
decreased resistance to UV-A radiation
|
|
Relative to:OMP_AN:53
Relative to: OMP_AN:53
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:(bioA-moaA)301(del) <br/><br>
+other:DE(bioA-moaA)301
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
|
|
Line 158: Line 158:
decreased resistance to UV-C radiation
decreased resistance to UV-C radiation
|
|
Relative to:OMP_AN:56
Relative to: OMP_AN:56
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:(bioA-moaA)301(del) <br/><br>
+other:DE(bioA-moaA)301
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
|
|
Line 178: Line 178:


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5968.U5570b868e4b3a&page=5968&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</span> || || || || || || || || || ||
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5968.U5570b868e4b3a&page=5968&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
|}
<noinclude>
<noinclude>
 
<!-- OMP category tags -->
</noinclude>
</noinclude>
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5968.U5570b868e4b3a--></protect>
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5968.U5570b868e4b3a--></protect>

Revision as of 00:24, 18 August 2015

Strain Summary

Strain Name

JC3890

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Taxon: K-12
  • NCBI Taxon ID: 83333
Genotype other:DE(bioA-moaA)301 other:DE(gpt-proA)62 other:F- other:Lambda- other:Rac-0 other:araC14 other:argE3(Oc) other:galK2(Oc) other:glnX44(AS) other:hisG4(Oc) other:kdgK51 other:lacY1 other:leuB6(Am) other:mgl-51 other:mtl-1 other:qsr'-0 other:rfbC1 other:rpoS396(Am) other:rpsL31(strR) other:thiE1 other:thr-1 other:tsx-33 other:xylA5
Strain Reference

PMID:334628[1]

Strain availability

CGSC# 3890

Ancestry

parent:AB1157

Annotated phenotypes


edit table


Notes

Deletion of (bioA-moaA)301 results in the deletion of uvrB.

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:64

OMP:0007204

decreased resistance to UV-A radiation

Relative to: OMP_AN:52

Genotype differences:

+other:DE(bioA-moaA)301

Condition differences:

no differences

  • other:8-MOP (0.1 microgram ml^-1)
  • other:UV-A
 ECO:0001027

colony counting evidence

PMID:20004108[2]

Reference Figure 1

OMP_AN:65

OMP:0007204

decreased resistance to UV-A radiation

Relative to: OMP_AN:53

Genotype differences:

+other:DE(bioA-moaA)301

Condition differences:

no differences

  • other:3-CPs (0.1 microgram ml^-1)
  • other:UV-A
 ECO:0001027

colony counting evidence

PMID:20004108[2]

Reference figure 2

OMP_AN:66

OMP:0007201

decreased resistance to UV-C radiation

Relative to: OMP_AN:56

Genotype differences:

+other:DE(bioA-moaA)301

Condition differences:

no differences

other:UV-C

ECO:0001027

colony counting evidence

PMID:20004108[2]

Reference figure 3

edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Kato, T et al. (1977) Analysis of the role of recombination and repair in mutagenesis of Escherichia coli by UV irradiation. Genetics 87 1-18 PubMed
  2. ↑ 2.0 2.1 2.2 Lage, C et al. (2010) Differential survival of Escherichia coli uvrA, uvrB, and uvrC mutants to psoralen plus UV-A (PUVA): Evidence for uncoupled action of nucleotide excision repair to process DNA adducts. J. Photochem. Photobiol. B, Biol. 98 40-7 PubMed

Pages in category "Strain:Escherichia coli K-12 JC3890"

The following 2 pages are in this category, out of 2 total.

O


Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=Category:Strain:Escherichia_coli_K-12_JC3890&oldid=17159"