Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
Line 2,123: Line 2,123:
 
|
 
|
 
UniProtKB:Q8XA21 lsrF
 
UniProtKB:Q8XA21 lsrF
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7654
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7655
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7656
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7631
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q93U24 csgA
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7657
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7658
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7659
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7633
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB80 espA
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7660
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7661
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7662
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q7DB81 espD
 +
CHEBI:17992 sucrose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7663
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7634
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Glucose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Glucose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:17234 glucose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7664
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7637
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Fructose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:Fructose (0.5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:28757 fructose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7665
 +
|
 +
 +
|
 +
OMP:0000109
 +
|
 +
presence of mucoid colonies
 +
|
 +
Relative to: OMP_AN:7637
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:Sucrose (0.5%)?
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
*medium:Sucrose (0.5%)
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:22047137
 +
|
 +
UniProtKB:Q8XA21 lsrF
 +
CHEBI:17992 sucrose
 
|
 
|
 
   
 
   

Revision as of 12:47, 12 December 2016

Strain Summary

Strain Name

Escherichia coli O157:H7 EDL933

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: O157:H7
  • NCBI Taxonomy ID: 83334
Genotype
Strain Reference
Strain availability

ATCC 43895

Ancestry
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7573

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:96 well plate
  • temperature:37C
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7574

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coladonin (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coladonin (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

Biofilm formation assay

OMP_AN:7575

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Coumarin (0.5 ug./mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Coumarin (0.5 ug./mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

Biofilm formation assay

OMP_AN:7576

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7573

Genotype differences:

no differences

Condition differences:

medium:>= Umbelliferone (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= Umbelliferone (0.5 ug/mL)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

Biofilm formation assay

OMP_AN:7577

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

OMP_AN:7578

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7579

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7577

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:Umbelliferone (50 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

OMP_AN:7580

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

OMP_AN:7581

NOT

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:7580

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7582

NOT

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:7580

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:Umbelliferone (50 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

OMP_AN:7583

OMP:0000084

pilus phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:nylon filter
  • temperature:37C
  • medium:LB medium
 ECO:0005033

electron microscopy evidence

PMID:24837471[1]

OMP_AN:7584

OMP:0000028

decreased number of pili

Relative to: OMP_AN:7583

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • other:nylon filter
  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0005033

electron microscopy evidence

PMID:24837471[1]

CHEBI:28794 Coumarin

OMP_AN:7585

OMP:0000028

decreased number of pili

Relative to: OMP_AN:7583

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • other:nylon filter
  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0005033

electron microscopy evidence

PMID:24837471[1]

CHEBI:27510 Umbelliferone

OMP_AN:7591

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q93U24 csgA

OMP_AN:7592

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0ABK8 csgB

OMP_AN:7593

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XCE8 flhD

OMP_AN:7594

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0AF07 motB

OMP_AN:7595

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DI68 stx2

OMP_AN:7596

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XAY7 lsrA

OMP_AN:7597

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8X902 luxS

OMP_AN:7598

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

rrsG

OMP_AN:7599

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DH26 stx1

OMP_AN:7600

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7591

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q93U24 csgA CHEBI:28794 Coumarin

OMP_AN:7601

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7591

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q93U24 csgA CHEBI:27510 Umbelliferone

OMP_AN:7602

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7591

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q93U24 csgA CHEBI:490095 Esculetin

OMP_AN:7603

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7592

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0ABK8 csgB CHEBI:28794 Coumarin

OMP_AN:7604

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7592

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0ABK8 csgB CHEBI:27510 Umbelliferone

OMP_AN:7605

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7592

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0ABK8 csgB CHEBI:490095 Esculetin

OMP_AN:7606

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7593

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XCE8 flhD CHEBI:28794 Coumarin

OMP_AN:7607

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7593

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XCE8 flhD CHEBI:27510 Umbelliferone

OMP_AN:7608

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7593

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XCE8 flhD CHEBI:490095 Esculetin

OMP_AN:7609

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7594

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0AF07 motB CHEBI:28794 Coumarin

OMP_AN:7610

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7594

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0AF07 motB CHEBI:27510 Umbelliferone

OMP_AN:7611

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7594

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:P0AF07 motB CHEBI:490095 Esculetin

OMP_AN:7612

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7595

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DI68 stx2 CHEBI:490095 Esculetin

OMP_AN:7613

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7596

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XAY7 lsrA CHEBI:28794 Coumarin

OMP_AN:7614

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7596

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XAY7 lsrA CHEBI:27510 Umbelliferone

OMP_AN:7615

OMP:0000267

increased gene expression

Relative to: OMP_AN:7595

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DI68 stx2 CHEBI:28794 Coumarin

OMP_AN:7616

OMP:0000267

increased gene expression

Relative to: OMP_AN:7595

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DI68 stx2 CHEBI:27510 Umbelliferone

OMP_AN:7617

OMP:0000267

increased gene expression

Relative to: OMP_AN:7596

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8XAY7 lsrA CHEBI:490095 Esculetin

OMP_AN:7618

OMP:0000267

increased gene expression

Relative to: OMP_AN:7597

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8X902 luxS CHEBI:28794 Coumarin

OMP_AN:7619

OMP:0000267

increased gene expression

Relative to: OMP_AN:7597

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8X902 luxS CHEBI:27510 Umbelliferone

OMP_AN:7620

OMP:0000267

increased gene expression

Relative to: OMP_AN:7597

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q8X902 luxS CHEBI:490095 Esculetin

OMP_AN:7621

OMP:0000267

increased gene expression

Relative to: OMP_AN:7598

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

rrsG CHEBI:28794 Coumarin

OMP_AN:7622

OMP:0000267

increased gene expression

Relative to: OMP_AN:7598

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

rrsG CHEBI:27510 Umbelliferone

OMP_AN:7623

NOT

OMP:0007080

altered gene expression

Relative to: OMP_AN:7598

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

rrsG CHEBI:490095 Esculetin

OMP_AN:7624

OMP:0007080

altered gene expression

Relative to: OMP_AN:7599

Genotype differences:

no differences

Condition differences:

medium:Coumarin (50 ug/mL)?

  • temperature:37C
  • medium:Coumarin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DH26 stx1 CHEBI:28794 Coumarin

OMP_AN:7625

OMP:0007080

altered gene expression

Relative to: OMP_AN:7599

Genotype differences:

no differences

Condition differences:

medium:Umbelliferone (50 ug/mL)?

  • temperature:37C
  • medium:LB medium
  • medium:Umbelliferone (50 ug/mL)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DH26 stx1 CHEBI:27510 Umbelliferone

OMP_AN:7626

OMP:0007080

altered gene expression

Relative to: OMP_AN:7599

Genotype differences:

no differences

Condition differences:

medium:Esculetin (50 ug/mL)?

  • temperature:37C
  • medium:Esculetin (50 ug/mL)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:24837471[1]

UniProtKB:Q7DH26 stx1 CHEBI:490095 Esculetin

OMP_AN:7627

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:96-well plate
  • temperature:37C
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:22047137[2]

Crystal violet biofilm assay

OMP_AN:7628

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7627

Genotype differences:

no differences

Condition differences:

medium:>= Acacia honey (0.1 %)?

  • other:96-well plate
  • temperature:37C
  • medium:>= Acacia honey (0.1 %)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:22047137[2]

Crystal violet biofilm assay

OMP_AN:7629

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7627

Genotype differences:

no differences

Condition differences:

other:>= Polyfloral honey (0.1 %)?

  • other:>= Polyfloral honey (0.1 %)
  • other:96-well plate
  • temperature:37C
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:22047137[2]

Crystal violet biofilm assay

OMP_AN:7630

OMP:0007026

decreased biofilm formation

Relative to: OMP_AN:7627

Genotype differences:

no differences

Condition differences:

medium:>= Clover honey (0.1 %)?

  • other:96-well plate
  • temperature:37C
  • medium:>= Clover honey (0.1 %)
  • medium:LB medium
 ECO:0000181

in vitro assay evidence

PMID:22047137[2]

Crystal violet biofilm assay

OMP_AN:7631

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q93U24 csgA

OMP_AN:7632

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:P43261 eae

OMP_AN:7633

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB80 espA

OMP_AN:7634

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB81 espD

OMP_AN:7635

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:O85645 ler

OMP_AN:7636

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XAY9 lsrB

OMP_AN:7637

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XA21 lsrF

OMP_AN:7638

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XAY7 lsrA

OMP_AN:7639

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7631

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q93U24 csgA

OMP_AN:7640

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7632

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:P43261 eae

OMP_AN:7641

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7633

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB80 espA

OMP_AN:7642

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7634

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB81 espD

OMP_AN:7643

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7635

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:O85645 ler

OMP_AN:7644

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7636

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XAY9 lsrB

OMP_AN:7645

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7637

Genotype differences:

no differences

Condition differences:

medium:Acacia honey (0.5%)?

  • temperature:37C
  • medium:Acacia honey (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XA21 lsrF

OMP_AN:7654

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7631

Genotype differences:

no differences

Condition differences:

medium:Glucose (0.5%)?

  • temperature:37C
  • medium:Glucose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q93U24 csgA CHEBI:17234 glucose

OMP_AN:7655

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7631

Genotype differences:

no differences

Condition differences:

medium:Fructose (0.5%)?

  • temperature:37C
  • medium:Fructose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q93U24 csgA CHEBI:28757 fructose

OMP_AN:7656

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7631

Genotype differences:

no differences

Condition differences:

medium:Sucrose (0.5%)?

  • temperature:37C
  • medium:LB medium
  • medium:Sucrose (0.5%)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q93U24 csgA CHEBI:17992 sucrose

OMP_AN:7657

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7633

Genotype differences:

no differences

Condition differences:

medium:Glucose (0.5%)?

  • temperature:37C
  • medium:Glucose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB80 espA CHEBI:17234 glucose

OMP_AN:7658

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7633

Genotype differences:

no differences

Condition differences:

medium:Fructose (0.5%)?

  • temperature:37C
  • medium:Fructose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB80 espA CHEBI:28757 fructose

OMP_AN:7659

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7633

Genotype differences:

no differences

Condition differences:

medium:Sucrose (0.5%)?

  • temperature:37C
  • medium:LB medium
  • medium:Sucrose (0.5%)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB80 espA CHEBI:17992 sucrose

OMP_AN:7660

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7634

Genotype differences:

no differences

Condition differences:

medium:Glucose (0.5%)?

  • temperature:37C
  • medium:Glucose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB81 espD CHEBI:17234 glucose

OMP_AN:7661

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7634

Genotype differences:

no differences

Condition differences:

medium:Fructose (0.5%)?

  • temperature:37C
  • medium:Fructose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB81 espD CHEBI:28757 fructose

OMP_AN:7662

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7634

Genotype differences:

no differences

Condition differences:

medium:Sucrose (0.5%)?

  • temperature:37C
  • medium:LB medium
  • medium:Sucrose (0.5%)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q7DB81 espD CHEBI:17992 sucrose

OMP_AN:7663

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7634

Genotype differences:

no differences

Condition differences:

medium:Glucose (0.5%)?

  • temperature:37C
  • medium:Glucose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XA21 lsrF CHEBI:17234 glucose

OMP_AN:7664

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7637

Genotype differences:

no differences

Condition differences:

medium:Fructose (0.5%)?

  • temperature:37C
  • medium:Fructose (0.5%)
  • medium:LB medium
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XA21 lsrF CHEBI:28757 fructose

OMP_AN:7665

OMP:0000109

presence of mucoid colonies

Relative to: OMP_AN:7637

Genotype differences:

no differences

Condition differences:

medium:Sucrose (0.5%)?

  • temperature:37C
  • medium:LB medium
  • medium:Sucrose (0.5%)
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:22047137[2]

UniProtKB:Q8XA21 lsrF CHEBI:17992 sucrose


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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 2.30 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page
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