Category:Strain:Escherichia-coli K-12 RJF604: Difference between revisions

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PMID:20004108
PMID:20004108
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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decreased resistance to UV-A radiation
decreased resistance to UV-A radiation
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Relative to:OMP_AN:54
Relative to: OMP_AN:54
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:uvrA::Tn10 <br/><br>
+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5  -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
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altered UV radiation resistance
altered UV radiation resistance
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Relative to:OMP_AN:55
Relative to: OMP_AN:55
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:uvrA::Tn10 <br/><br>
+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5  -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
|
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decreased resistance to UV-C radiation
decreased resistance to UV-C radiation
|
|
Relative to:OMP_AN:57
Relative to: OMP_AN:57
<br>
 
Genotype differences:<br>
<hr>Genotype differences:<br>
+other:uvrA::Tn10 <br/><br>
+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5  -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5
Condition differences:<br>
<hr>Condition differences:<br>
no differences
no differences
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Revision as of 00:24, 18 August 2015

Strain Summary

Strain Name

RJF604

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Taxon: K-12
  • NCBI Taxon ID: 83333
Genotype other:DE(gpt-proA)62 other:F- other:Lambda- other:Rac-0 other:araC14 other:argE3(Oc) other:galK2(Oc) other:glnX44(AS) other:hisG4(Oc) other:kdgK51 other:lacY1 other:leuB6(Am) other:mgl-51 other:mtl-1 other:qsr'-0 other:rfbC1 other:rpoS396(Am) other:rpsL31(strR) other:thiE1 other:thr-1 other:tsx-33 other:uvrA::Tn10 other:uvrC34 other:xylA5
Strain Reference

PMID:20004108[1]

Strain availability
Ancestry
  • ancestor:AB1157
  • parent:AB1884
  • parent:N3137
Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:77

OMP:0007204

decreased resistance to UV-A radiation

Relative to: OMP_AN:54

Genotype differences:

+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5 -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5

Condition differences:

no differences

  • other:8-MOP (0.1 microgram ml^-1)
  • other:UV-A
 ECO:0001027

colony counting evidence

PMID:20004108[1]

Reference figure 1

OMP_AN:78

NOT

OMP:0005125

altered UV radiation resistance

Relative to: OMP_AN:55

Genotype differences:

+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5 -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5

Condition differences:

no differences

  • other:3-CPs (0.1 microgram ml^-1)
  • other:UV-A
 ECO:0001027

colony counting evidence

PMID:20004108[1]

Reference figure 2

OMP_AN:79

OMP:0007201

decreased resistance to UV-C radiation

Relative to: OMP_AN:57

Genotype differences:

+other:DE(gpt-proA)62 +other:F- +other:Lambda- +other:Rac-0 +other:araC14 +other:argE3(Oc) +other:galK2(Oc) +other:glnX44(AS) +other:hisG4(Oc) +other:kdgK51 +other:lacY1 +other:leuB6(Am) +other:mgl-51 +other:mtl-1 +other:qsr'-0 +other:rfbC1 +other:rpoS396(Am) +other:rpsL31(strR) +other:thiE1 +other:thr-1 +other:tsx-33 +other:uvrA::Tn10 +other:uvrC34 +other:xylA5 -DE(gpt-proA)62 -F- -Lambda- -Rac-0 -araC14 -argE3(Oc) -galK2(Oc) -glnX44(AS) -hisG4(Oc) -kdgK51 -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -qsr'-0 -rfbC1 -rpoS396(Am) -rpsL31(strR) -thiE1 -thr-1 -tsx-33 -uvrC34 -xylA5

Condition differences:

no differences

other:UV-C

ECO:0001027

colony counting evidence

PMID:20004108[1]

Reference figure 3

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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 Lage, C et al. (2010) Differential survival of Escherichia coli uvrA, uvrB, and uvrC mutants to psoralen plus UV-A (PUVA): Evidence for uncoupled action of nucleotide excision repair to process DNA adducts. J. Photochem. Photobiol. B, Biol. 98 40-7 PubMed

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