Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"
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Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
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(15 intermediate revisions by the same user not shown) | |||
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| | | | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7583 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000084 | ||
+ | | | ||
+ | pilus phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *other:nylon filter | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0005033 | ||
+ | | | ||
+ | electron microscopy evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7584 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000028 | ||
+ | | | ||
+ | decreased number of pili | ||
+ | | | ||
+ | Relative to: OMP_AN:7583 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *other:nylon filter | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0005033 | ||
+ | | | ||
+ | electron microscopy evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7585 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000028 | ||
+ | | | ||
+ | decreased number of pili | ||
+ | | | ||
+ | Relative to: OMP_AN:7583 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *other:nylon filter | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0005033 | ||
+ | | | ||
+ | electron microscopy evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7591 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7592 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0ABK8 csgB | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7593 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XCE8 flhD | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7594 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0AF07 motB | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7595 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DI68 stx2 | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7596 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XAY7 lsrA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7597 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8X902 luxS | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7598 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | rrsG | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7599 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DH26 stx1 | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7600 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7591 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7601 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7591 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7602 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7591 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7603 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7592 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0ABK8 csgB | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7604 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7592 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0ABK8 csgB | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7605 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7592 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0ABK8 csgB | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7606 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7593 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XCE8 flhD | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7607 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7593 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XCE8 flhD | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7608 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7593 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XCE8 flhD | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7609 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7594 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0AF07 motB | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7610 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7594 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0AF07 motB | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7611 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7594 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:P0AF07 motB | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7612 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7595 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DI68 stx2 | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7613 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7596 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XAY7 lsrA | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7614 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7596 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XAY7 lsrA | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7615 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7595 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DI68 stx2 | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7616 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7595 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DI68 stx2 | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7617 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7596 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8XAY7 lsrA | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7618 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7597 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8X902 luxS | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7619 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7597 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8X902 luxS | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7620 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7597 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q8X902 luxS | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7621 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7598 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | rrsG | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7622 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7598 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | rrsG | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7623 | ||
+ | | | ||
+ | NOT | ||
+ | | | ||
+ | OMP:0007080 | ||
+ | | | ||
+ | altered gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7598 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | rrsG | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7624 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007080 | ||
+ | | | ||
+ | altered gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7599 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Coumarin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Coumarin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DH26 stx1 | ||
+ | CHEBI:28794 Coumarin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7625 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007080 | ||
+ | | | ||
+ | altered gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7599 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Umbelliferone (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Umbelliferone (50 ug/mL) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DH26 stx1 | ||
+ | CHEBI:27510 Umbelliferone | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7626 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007080 | ||
+ | | | ||
+ | altered gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7599 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Esculetin (50 ug/mL)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Esculetin (50 ug/mL) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:24837471 | ||
+ | | | ||
+ | UniProtKB:Q7DH26 stx1 | ||
+ | CHEBI:490095 Esculetin | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7627 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000176 | ||
+ | | | ||
+ | biofilm phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000181 | ||
+ | | | ||
+ | in vitro assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7628 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7627 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:>= Acacia honey (0.1 %)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:>= Acacia honey (0.1 %) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000181 | ||
+ | | | ||
+ | in vitro assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7629 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7627 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | other:>= Polyfloral honey (0.1 %)? | ||
+ | | | ||
+ | *other:>= Polyfloral honey (0.1 %) | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000181 | ||
+ | | | ||
+ | in vitro assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7630 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7627 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:>= Clover honey (0.1 %)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:>= Clover honey (0.1 %) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000181 | ||
+ | | | ||
+ | in vitro assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7631 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7632 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P43261 eae | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7633 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB80 espA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7634 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB81 espD | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7635 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:O85645 ler | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7636 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XAY9 lsrB | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7637 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XA21 lsrF | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7638 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000253 | ||
+ | | | ||
+ | gene expression phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XAY7 lsrA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7639 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7631 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7640 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7632 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P43261 eae | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7641 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7633 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB80 espA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7642 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7634 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB81 espD | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7643 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7635 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:O85645 ler | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7644 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7636 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XAY9 lsrB | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7645 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7637 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XA21 lsrF | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7654 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7631 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Glucose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Glucose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:17234 glucose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7655 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7631 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Fructose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Fructose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:28757 fructose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7656 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7631 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Sucrose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Sucrose (0.5%) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q93U24 csgA | ||
+ | CHEBI:17992 sucrose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7657 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7633 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Glucose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Glucose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB80 espA | ||
+ | CHEBI:17234 glucose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7658 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7633 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Fructose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Fructose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB80 espA | ||
+ | CHEBI:28757 fructose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7659 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7633 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Sucrose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Sucrose (0.5%) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB80 espA | ||
+ | CHEBI:17992 sucrose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7660 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7634 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Glucose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Glucose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB81 espD | ||
+ | CHEBI:17234 glucose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7661 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7634 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Fructose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Fructose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB81 espD | ||
+ | CHEBI:28757 fructose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7662 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7634 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Sucrose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Sucrose (0.5%) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q7DB81 espD | ||
+ | CHEBI:17992 sucrose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7663 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7637 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Glucose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Glucose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XA21 lsrF | ||
+ | CHEBI:17234 glucose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7664 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7637 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Fructose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Fructose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XA21 lsrF | ||
+ | CHEBI:28757 fructose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7665 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000268 | ||
+ | | | ||
+ | decreased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7637 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Sucrose (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Sucrose (0.5%) | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:Q8XA21 lsrF | ||
+ | CHEBI:17992 sucrose | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7666 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000176 | ||
+ | | | ||
+ | biofilm phenotype | ||
+ | | | ||
+ | Relative to: | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | <hr>Condition differences:<br> | ||
+ | Nothing to compare<br/> | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7667 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Honey (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:Honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7668 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Glucose (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:Glucose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:17234 glucose | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7669 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Fructose (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:Fructose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:28757 fructose | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7670 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Sucrose (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Sucrose (0.5%) | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:17992 sucrose | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7671 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Lactose (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Lactose (0.5%) | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:17716 lactose | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7672 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0007026 | ||
+ | | | ||
+ | decreased biofilm formation | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Galactose (0.5%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:Galactose (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:28260 galactose | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7673 | ||
+ | | | ||
+ | NOT | ||
+ | | | ||
+ | OMP:0005129 | ||
+ | | | ||
+ | altered biofilm | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Methylglyoxal (0.001%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | *medium:Methylglyoxal (0.001%) | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | |||
+ | | | ||
+ | CHEBI:17158 methylglyoxal | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7674 | ||
+ | | | ||
+ | NOT | ||
+ | | | ||
+ | OMP:0005129 | ||
+ | | | ||
+ | altered biofilm | ||
+ | | | ||
+ | Relative to: OMP_AN:7666 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:H2O2 (0.00005%)? | ||
+ | | | ||
+ | *other:96-well plate | ||
+ | *temperature:37C | ||
+ | *medium:H2O2 (0.00005%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000182 | ||
+ | | | ||
+ | in vitro culture assay evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | CHEBI:16240 H2O2 | ||
+ | | | ||
+ | Crystal violet biofilm assay | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" |
Latest revision as of 13:38, 15 December 2016
Contents
Strain Summary
Strain Name |
Escherichia coli O157:H7 EDL933 |
---|---|
Synonyms | |
Taxon Information |
|
Genotype | |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
Phenotype Annotation
Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:7573 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
Biofilm formation assay | |||
OMP_AN:7574 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coladonin (0.5 ug/mL)? |
|
ECO:0000181 |
in vitro assay evidence |
Biofilm formation assay | |||
OMP_AN:7575 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coumarin (0.5 ug./mL)? |
|
ECO:0000181 |
in vitro assay evidence |
CHEBI:28794 Coumarin |
Biofilm formation assay | ||
OMP_AN:7576 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Umbelliferone (0.5 ug/mL)? |
|
ECO:0000181 |
in vitro assay evidence |
CHEBI:27510 Umbelliferone |
Biofilm formation assay | ||
OMP_AN:7577 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7578 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28794 Coumarin |
|||
OMP_AN:7579 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:27510 Umbelliferone |
|||
OMP_AN:7580 |
OMP:0000111 |
presence of cell motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7581 |
NOT |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:28794 Coumarin |
||
OMP_AN:7582 |
NOT |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0005803 |
motility assay evidence |
CHEBI:27510 Umbelliferone |
||
OMP_AN:7583 |
OMP:0000084 |
pilus phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005033 |
electron microscopy evidence |
||||
OMP_AN:7584 |
OMP:0000028 |
decreased number of pili |
Relative to: OMP_AN:7583 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0005033 |
electron microscopy evidence |
CHEBI:28794 Coumarin |
|||
OMP_AN:7585 |
OMP:0000028 |
decreased number of pili |
Relative to: OMP_AN:7583 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0005033 |
electron microscopy evidence |
CHEBI:27510 Umbelliferone |
|||
OMP_AN:7591 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA |
|||
OMP_AN:7592 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0ABK8 csgB |
|||
OMP_AN:7593 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XCE8 flhD |
|||
OMP_AN:7594 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0AF07 motB |
|||
OMP_AN:7595 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DI68 stx2 |
|||
OMP_AN:7596 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY7 lsrA |
|||
OMP_AN:7597 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8X902 luxS |
|||
OMP_AN:7598 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
rrsG |
|||
OMP_AN:7599 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DH26 stx1 |
|||
OMP_AN:7600 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:28794 Coumarin |
|||
OMP_AN:7601 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:27510 Umbelliferone |
|||
OMP_AN:7602 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:490095 Esculetin |
|||
OMP_AN:7603 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0ABK8 csgB CHEBI:28794 Coumarin |
|||
OMP_AN:7604 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0ABK8 csgB CHEBI:27510 Umbelliferone |
|||
OMP_AN:7605 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0ABK8 csgB CHEBI:490095 Esculetin |
|||
OMP_AN:7606 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XCE8 flhD CHEBI:28794 Coumarin |
|||
OMP_AN:7607 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XCE8 flhD CHEBI:27510 Umbelliferone |
|||
OMP_AN:7608 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XCE8 flhD CHEBI:490095 Esculetin |
|||
OMP_AN:7609 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0AF07 motB CHEBI:28794 Coumarin |
|||
OMP_AN:7610 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0AF07 motB CHEBI:27510 Umbelliferone |
|||
OMP_AN:7611 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P0AF07 motB CHEBI:490095 Esculetin |
|||
OMP_AN:7612 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DI68 stx2 CHEBI:490095 Esculetin |
|||
OMP_AN:7613 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY7 lsrA CHEBI:28794 Coumarin |
|||
OMP_AN:7614 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY7 lsrA CHEBI:27510 Umbelliferone |
|||
OMP_AN:7615 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DI68 stx2 CHEBI:28794 Coumarin |
|||
OMP_AN:7616 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DI68 stx2 CHEBI:27510 Umbelliferone |
|||
OMP_AN:7617 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY7 lsrA CHEBI:490095 Esculetin |
|||
OMP_AN:7618 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8X902 luxS CHEBI:28794 Coumarin |
|||
OMP_AN:7619 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8X902 luxS CHEBI:27510 Umbelliferone |
|||
OMP_AN:7620 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8X902 luxS CHEBI:490095 Esculetin |
|||
OMP_AN:7621 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
rrsG CHEBI:28794 Coumarin |
|||
OMP_AN:7622 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
rrsG CHEBI:27510 Umbelliferone |
|||
OMP_AN:7623 |
NOT |
OMP:0007080 |
altered gene expression |
Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
rrsG CHEBI:490095 Esculetin |
||
OMP_AN:7624 |
OMP:0007080 |
altered gene expression |
Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DH26 stx1 CHEBI:28794 Coumarin |
|||
OMP_AN:7625 |
OMP:0007080 |
altered gene expression |
Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DH26 stx1 CHEBI:27510 Umbelliferone |
|||
OMP_AN:7626 |
OMP:0007080 |
altered gene expression |
Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DH26 stx1 CHEBI:490095 Esculetin |
|||
OMP_AN:7627 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7628 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: medium:>= Acacia honey (0.1 %)? |
|
ECO:0000181 |
in vitro assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7629 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: other:>= Polyfloral honey (0.1 %)? |
|
ECO:0000181 |
in vitro assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7630 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: medium:>= Clover honey (0.1 %)? |
|
ECO:0000181 |
in vitro assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7631 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA |
|||
OMP_AN:7632 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P43261 eae |
|||
OMP_AN:7633 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB80 espA |
|||
OMP_AN:7634 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB81 espD |
|||
OMP_AN:7635 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:O85645 ler |
|||
OMP_AN:7636 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY9 lsrB |
|||
OMP_AN:7637 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XA21 lsrF |
|||
OMP_AN:7638 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY7 lsrA |
|||
OMP_AN:7639 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA |
|||
OMP_AN:7640 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7632 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P43261 eae |
|||
OMP_AN:7641 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB80 espA |
|||
OMP_AN:7642 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB81 espD |
|||
OMP_AN:7643 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7635 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:O85645 ler |
|||
OMP_AN:7644 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7636 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XAY9 lsrB |
|||
OMP_AN:7645 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XA21 lsrF |
|||
OMP_AN:7654 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:17234 glucose |
|||
OMP_AN:7655 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:28757 fructose |
|||
OMP_AN:7656 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q93U24 csgA CHEBI:17992 sucrose |
|||
OMP_AN:7657 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB80 espA CHEBI:17234 glucose |
|||
OMP_AN:7658 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB80 espA CHEBI:28757 fructose |
|||
OMP_AN:7659 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB80 espA CHEBI:17992 sucrose |
|||
OMP_AN:7660 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB81 espD CHEBI:17234 glucose |
|||
OMP_AN:7661 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB81 espD CHEBI:28757 fructose |
|||
OMP_AN:7662 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q7DB81 espD CHEBI:17992 sucrose |
|||
OMP_AN:7663 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XA21 lsrF CHEBI:17234 glucose |
|||
OMP_AN:7664 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XA21 lsrF CHEBI:28757 fructose |
|||
OMP_AN:7665 |
OMP:0000268 |
decreased gene expression |
Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:Q8XA21 lsrF CHEBI:17992 sucrose |
|||
OMP_AN:7666 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000182 |
in vitro culture assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7667 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Honey (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
Crystal violet biofilm assay | |||
OMP_AN:7668 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17234 glucose |
Crystal violet biofilm assay | ||
OMP_AN:7669 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:28757 fructose |
Crystal violet biofilm assay | ||
OMP_AN:7670 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17992 sucrose |
Crystal violet biofilm assay | ||
OMP_AN:7671 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Lactose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17716 lactose |
Crystal violet biofilm assay | ||
OMP_AN:7672 |
OMP:0007026 |
decreased biofilm formation |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Galactose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:28260 galactose |
Crystal violet biofilm assay | ||
OMP_AN:7673 |
NOT |
OMP:0005129 |
altered biofilm |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Methylglyoxal (0.001%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17158 methylglyoxal |
Crystal violet biofilm assay | |
OMP_AN:7674 |
NOT |
OMP:0005129 |
altered biofilm |
Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:H2O2 (0.00005%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:16240 H2O2 |
Crystal violet biofilm assay | |
Additional Information
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References
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- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 2.30 2.31 2.32 2.33 2.34 2.35 2.36 2.37 2.38 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page
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- OMP:0000028 ! decreased number of pili
- OMP:0000067 ! presence of motility by swarming
- OMP:0000084 ! pilus phenotype
- OMP:0000111 ! presence of motility by swimming
- OMP:0000176 ! biofilm phenotype
- OMP:0000253 ! gene expression phenotype
- OMP:0000267 ! increased gene expression
- OMP:0000268 ! decreased gene expression
- OMP:0005129 ! altered biofilm
- OMP:0005324 ! altered cell motility by swimming
- OMP:0007026 ! decreased biofilm formation
- OMP:0007080 ! altered gene expression
- OMP:0007092 ! decreased motility by swarming