Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"

Latest revision as of 13:38, 15 December 2016

Strain Summary

Strain Name	Escherichia coli O157:H7 EDL933
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: O157:H7 NCBI Taxonomy ID: 83334
Genotype
Strain Reference
Strain availability	ATCC 43895
Ancestry
Annotated phenotypes
edit table

Notes

Phenotype Annotation

Annotation ID	not	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:7573		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:96 well plate temperature:37C medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:24837471^[1]		Biofilm formation assay
OMP_AN:7574		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coladonin (0.5 ug/mL)?	other:96 well plate temperature:37C medium:>= Coladonin (0.5 ug/mL) medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:24837471^[1]		Biofilm formation assay
OMP_AN:7575		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Coumarin (0.5 ug./mL)?	other:96 well plate temperature:37C medium:>= Coumarin (0.5 ug./mL) medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:24837471^[1]	CHEBI:28794 Coumarin	Biofilm formation assay
OMP_AN:7576		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7573 Genotype differences: no differences Condition differences: medium:>= Umbelliferone (0.5 ug/mL)?	other:96 well plate temperature:37C medium:>= Umbelliferone (0.5 ug/mL) medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:24837471^[1]	CHEBI:27510 Umbelliferone	Biofilm formation assay
OMP_AN:7577		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]
OMP_AN:7578		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]	CHEBI:28794 Coumarin
OMP_AN:7579		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7577 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:Umbelliferone (50 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]	CHEBI:27510 Umbelliferone
OMP_AN:7580		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]
OMP_AN:7581	NOT	OMP:0005324	altered cell motility by swimming	Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]	CHEBI:28794 Coumarin
OMP_AN:7582	NOT	OMP:0005324	altered cell motility by swimming	Relative to: OMP_AN:7580 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:Umbelliferone (50 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:24837471^[1]	CHEBI:27510 Umbelliferone
OMP_AN:7583		OMP:0000084	pilus phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:nylon filter temperature:37C medium:LB medium	ECO:0005033	electron microscopy evidence	PMID:24837471^[1]
OMP_AN:7584		OMP:0000028	decreased number of pili	Relative to: OMP_AN:7583 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	other:nylon filter temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0005033	electron microscopy evidence	PMID:24837471^[1]	CHEBI:28794 Coumarin
OMP_AN:7585		OMP:0000028	decreased number of pili	Relative to: OMP_AN:7583 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	other:nylon filter temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0005033	electron microscopy evidence	PMID:24837471^[1]	CHEBI:27510 Umbelliferone
OMP_AN:7591		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q93U24 csgA
OMP_AN:7592		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0ABK8 csgB
OMP_AN:7593		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XCE8 flhD
OMP_AN:7594		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0AF07 motB
OMP_AN:7595		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DI68 stx2
OMP_AN:7596		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XAY7 lsrA
OMP_AN:7597		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8X902 luxS
OMP_AN:7598		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	rrsG
OMP_AN:7599		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DH26 stx1
OMP_AN:7600		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q93U24 csgA CHEBI:28794 Coumarin
OMP_AN:7601		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q93U24 csgA CHEBI:27510 Umbelliferone
OMP_AN:7602		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7591 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q93U24 csgA CHEBI:490095 Esculetin
OMP_AN:7603		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0ABK8 csgB CHEBI:28794 Coumarin
OMP_AN:7604		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0ABK8 csgB CHEBI:27510 Umbelliferone
OMP_AN:7605		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7592 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0ABK8 csgB CHEBI:490095 Esculetin
OMP_AN:7606		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XCE8 flhD CHEBI:28794 Coumarin
OMP_AN:7607		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XCE8 flhD CHEBI:27510 Umbelliferone
OMP_AN:7608		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7593 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XCE8 flhD CHEBI:490095 Esculetin
OMP_AN:7609		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0AF07 motB CHEBI:28794 Coumarin
OMP_AN:7610		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0AF07 motB CHEBI:27510 Umbelliferone
OMP_AN:7611		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7594 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:P0AF07 motB CHEBI:490095 Esculetin
OMP_AN:7612		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DI68 stx2 CHEBI:490095 Esculetin
OMP_AN:7613		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XAY7 lsrA CHEBI:28794 Coumarin
OMP_AN:7614		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XAY7 lsrA CHEBI:27510 Umbelliferone
OMP_AN:7615		OMP:0000267	increased gene expression	Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DI68 stx2 CHEBI:28794 Coumarin
OMP_AN:7616		OMP:0000267	increased gene expression	Relative to: OMP_AN:7595 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DI68 stx2 CHEBI:27510 Umbelliferone
OMP_AN:7617		OMP:0000267	increased gene expression	Relative to: OMP_AN:7596 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8XAY7 lsrA CHEBI:490095 Esculetin
OMP_AN:7618		OMP:0000267	increased gene expression	Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8X902 luxS CHEBI:28794 Coumarin
OMP_AN:7619		OMP:0000267	increased gene expression	Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8X902 luxS CHEBI:27510 Umbelliferone
OMP_AN:7620		OMP:0000267	increased gene expression	Relative to: OMP_AN:7597 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q8X902 luxS CHEBI:490095 Esculetin
OMP_AN:7621		OMP:0000267	increased gene expression	Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	rrsG CHEBI:28794 Coumarin
OMP_AN:7622		OMP:0000267	increased gene expression	Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	rrsG CHEBI:27510 Umbelliferone
OMP_AN:7623	NOT	OMP:0007080	altered gene expression	Relative to: OMP_AN:7598 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	rrsG CHEBI:490095 Esculetin
OMP_AN:7624		OMP:0007080	altered gene expression	Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Coumarin (50 ug/mL)?	temperature:37C medium:Coumarin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DH26 stx1 CHEBI:28794 Coumarin
OMP_AN:7625		OMP:0007080	altered gene expression	Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Umbelliferone (50 ug/mL)?	temperature:37C medium:LB medium medium:Umbelliferone (50 ug/mL)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DH26 stx1 CHEBI:27510 Umbelliferone
OMP_AN:7626		OMP:0007080	altered gene expression	Relative to: OMP_AN:7599 Genotype differences: no differences Condition differences: medium:Esculetin (50 ug/mL)?	temperature:37C medium:Esculetin (50 ug/mL) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:24837471^[1]	UniProtKB:Q7DH26 stx1 CHEBI:490095 Esculetin
OMP_AN:7627		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:96-well plate temperature:37C medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7628		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: medium:>= Acacia honey (0.1 %)?	other:96-well plate temperature:37C medium:>= Acacia honey (0.1 %) medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7629		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: other:>= Polyfloral honey (0.1 %)?	other:>= Polyfloral honey (0.1 %) other:96-well plate temperature:37C medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7630		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7627 Genotype differences: no differences Condition differences: medium:>= Clover honey (0.1 %)?	other:96-well plate temperature:37C medium:>= Clover honey (0.1 %) medium:LB medium	ECO:0000181	in vitro assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7631		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q93U24 csgA
OMP_AN:7632		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:P43261 eae
OMP_AN:7633		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB80 espA
OMP_AN:7634		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB81 espD
OMP_AN:7635		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:O85645 ler
OMP_AN:7636		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XAY9 lsrB
OMP_AN:7637		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XA21 lsrF
OMP_AN:7638		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XAY7 lsrA
OMP_AN:7639		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q93U24 csgA
OMP_AN:7640		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7632 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:P43261 eae
OMP_AN:7641		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB80 espA
OMP_AN:7642		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB81 espD
OMP_AN:7643		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7635 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:O85645 ler
OMP_AN:7644		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7636 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XAY9 lsrB
OMP_AN:7645		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)?	temperature:37C medium:Acacia honey (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XA21 lsrF
OMP_AN:7654		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)?	temperature:37C medium:Glucose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q93U24 csgA CHEBI:17234 glucose
OMP_AN:7655		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)?	temperature:37C medium:Fructose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q93U24 csgA CHEBI:28757 fructose
OMP_AN:7656		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7631 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)?	temperature:37C medium:LB medium medium:Sucrose (0.5%)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q93U24 csgA CHEBI:17992 sucrose
OMP_AN:7657		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)?	temperature:37C medium:Glucose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB80 espA CHEBI:17234 glucose
OMP_AN:7658		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)?	temperature:37C medium:Fructose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB80 espA CHEBI:28757 fructose
OMP_AN:7659		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7633 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)?	temperature:37C medium:LB medium medium:Sucrose (0.5%)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB80 espA CHEBI:17992 sucrose
OMP_AN:7660		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)?	temperature:37C medium:Glucose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB81 espD CHEBI:17234 glucose
OMP_AN:7661		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)?	temperature:37C medium:Fructose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB81 espD CHEBI:28757 fructose
OMP_AN:7662		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7634 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)?	temperature:37C medium:LB medium medium:Sucrose (0.5%)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q7DB81 espD CHEBI:17992 sucrose
OMP_AN:7663		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)?	temperature:37C medium:Glucose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XA21 lsrF CHEBI:17234 glucose
OMP_AN:7664		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)?	temperature:37C medium:Fructose (0.5%) medium:LB medium	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XA21 lsrF CHEBI:28757 fructose
OMP_AN:7665		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7637 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)?	temperature:37C medium:LB medium medium:Sucrose (0.5%)	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:22047137^[2]	UniProtKB:Q8XA21 lsrF CHEBI:17992 sucrose
OMP_AN:7666		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:96-well plate temperature:37C medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7667		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Honey (0.5%)?	other:96-well plate temperature:37C medium:Honey (0.5%) medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]		Crystal violet biofilm assay
OMP_AN:7668		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)?	other:96-well plate temperature:37C medium:Glucose (0.5%) medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:17234 glucose	Crystal violet biofilm assay
OMP_AN:7669		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)?	other:96-well plate temperature:37C medium:Fructose (0.5%) medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:28757 fructose	Crystal violet biofilm assay
OMP_AN:7670		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)?	other:96-well plate temperature:37C medium:LB medium medium:Sucrose (0.5%)	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:17992 sucrose	Crystal violet biofilm assay
OMP_AN:7671		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Lactose (0.5%)?	other:96-well plate temperature:37C medium:LB medium medium:Lactose (0.5%)	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:17716 lactose	Crystal violet biofilm assay
OMP_AN:7672		OMP:0007026	decreased biofilm formation	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Galactose (0.5%)?	other:96-well plate temperature:37C medium:Galactose (0.5%) medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:28260 galactose	Crystal violet biofilm assay
OMP_AN:7673	NOT	OMP:0005129	altered biofilm	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:Methylglyoxal (0.001%)?	other:96-well plate temperature:37C medium:LB medium medium:Methylglyoxal (0.001%)	ECO:0000182	in vitro culture assay evidence		CHEBI:17158 methylglyoxal	Crystal violet biofilm assay
OMP_AN:7674	NOT	OMP:0005129	altered biofilm	Relative to: OMP_AN:7666 Genotype differences: no differences Condition differences: medium:H2O2 (0.00005%)?	other:96-well plate temperature:37C medium:H2O2 (0.00005%) medium:LB medium	ECO:0000182	in vitro culture assay evidence	PMID:22047137^[2]	CHEBI:16240 H2O2	Crystal violet biofilm assay
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↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 ^1.15 ^1.16 ^1.17 ^1.18 ^1.19 ^1.20 ^1.21 ^1.22 ^1.23 ^1.24 ^1.25 ^1.26 ^1.27 ^1.28 ^1.29 ^1.30 ^1.31 ^1.32 ^1.33 ^1.34 ^1.35 ^1.36 ^1.37 ^1.38 ^1.39 ^1.40 ^1.41 ^1.42 ^1.43 ^1.44 ^1.45 ^1.46 ^1.47 ^1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 ^2.32 ^2.33 ^2.34 ^2.35 ^2.36 ^2.37 ^2.38 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page

[PMID:24837471-1] 1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 ^1.15 ^1.16 ^1.17 ^1.18 ^1.19 ^1.20 ^1.21 ^1.22 ^1.23 ^1.24 ^1.25 ^1.26 ^1.27 ^1.28 ^1.29 ^1.30 ^1.31 ^1.32 ^1.33 ^1.34 ^1.35 ^1.36 ^1.37 ^1.38 ^1.39 ^1.40 ^1.41 ^1.42 ^1.43 ^1.44 ^1.45 ^1.46 ^1.47 ^1.48 Lee, JH et al. () Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. Phytomedicine 21 1037-42 PubMed OMPwiki page

[PMID:22047137-2] 2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 ^2.32 ^2.33 ^2.34 ^2.35 ^2.36 ^2.37 ^2.38 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page

[1]

[2]

Difference between revisions of "OMP ST:6329 ! Escherichia coli O157:H7 EDL933"

Latest revision as of 13:38, 15 December 2016

Contents

Strain Summary

Notes

Phenotype Annotation

Additional Information

Links

References

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Evidence & Conclusion Ontology

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@@ Line 2: / Line 2: @@
 ==Strain Summary==
-<newTableEdit>
+<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc-->
-Template:Strain_info_table
+<!--
-</newTableEdit>
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{|   id="E583dddb20edcc"  class=" tableEdit Strain_info_table"
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Strain Name
+||
+Escherichia coli O157:H7 EDL933
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Synonyms
+||
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
+||
+*Pangenome: Escherichia coli
+*Subspecies and/or strain: O157:H7
+*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Genotype
+||
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
+||
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Strain availability
+||
+[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Ancestry
+||
+|-
+!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
+||
+|- class="tableEdit_footer"
+|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
+|}
+<noinclude>
+<!-- OMP category tags -->
+</noinclude>
+<!--box uid=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc--></protect>
@@ Line 11: / Line 59: @@
 ==Phenotype Annotation==
-<newTableEdit>
+<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5-->
-Template:OMP_annotation_table
+<!--
-</newTableEdit>
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H583dddb217fb5"  class=" tableEdit OMP_annotation_table dataTable"
+|- align='left' bgcolor='#CCCCFF'
+!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+|-
+|
+OMP_AN:7573
+|
+|
+OMP:0000176
+|
+biofilm phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*other:96 well plate
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:24837471
+|
+|
+Biofilm formation assay
+|-
+|
+OMP_AN:7574
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7573
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= Coladonin (0.5 ug/mL)?
+|
+*other:96 well plate
+*temperature:37C
+*medium:>= Coladonin (0.5 ug/mL)
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:24837471
+|
+|
+Biofilm formation assay
+|-
+|
+OMP_AN:7575
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7573
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= Coumarin (0.5 ug./mL)?
+|
+*other:96 well plate
+*temperature:37C
+*medium:>= Coumarin (0.5 ug./mL)
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:24837471
+|
+CHEBI:28794 Coumarin
+|
+Biofilm formation assay
+|-
+|
+OMP_AN:7576
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7573
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= Umbelliferone (0.5 ug/mL)?
+|
+*other:96 well plate
+*temperature:37C
+*medium:>= Umbelliferone (0.5 ug/mL)
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:24837471
+|
+CHEBI:27510 Umbelliferone
+|
+Biofilm formation assay
+|-
+|
+OMP_AN:7577
+|
+|
+OMP:0000067
+|
+presence of cell motility by swarming
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:swarming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+|
+|-
+|
+OMP_AN:7578
+|
+|
+OMP:0007092
+|
+decreased cell motility by swarming
+|
+Relative to: OMP_AN:7577
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:swarming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7579
+|
+|
+OMP:0007092
+|
+decreased cell motility by swarming
+|
+Relative to: OMP_AN:7577
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:Umbelliferone (50 ug/mL)
+*medium:swarming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7580
+|
+|
+OMP:0000111
+|
+presence of cell motility by swimming
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:swimming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+|
+|-
+|
+OMP_AN:7581
+|
+NOT
+|
+OMP:0005324
+|
+altered cell motility by swimming
+|
+Relative to: OMP_AN:7580
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:swimming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7582
+|
+NOT
+|
+OMP:0005324
+|
+altered cell motility by swimming
+|
+Relative to: OMP_AN:7580
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:Umbelliferone (50 ug/mL)
+*medium:swimming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:24837471
+|
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7583
+|
+|
+OMP:0000084
+|
+pilus phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*other:nylon filter
+*temperature:37C
+*medium:LB medium
+|
+ECO:0005033
+|
+electron microscopy evidence
+|
+PMID:24837471
+|
+|
+|-
+|
+OMP_AN:7584
+|
+|
+OMP:0000028
+|
+decreased number of pili
+|
+Relative to: OMP_AN:7583
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*other:nylon filter
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0005033
+|
+electron microscopy evidence
+|
+PMID:24837471
+|
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7585
+|
+|
+OMP:0000028
+|
+decreased number of pili
+|
+Relative to: OMP_AN:7583
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*other:nylon filter
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0005033
+|
+electron microscopy evidence
+|
+PMID:24837471
+|
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7591
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q93U24 csgA
+|
+|-
+|
+OMP_AN:7592
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0ABK8 csgB
+|
+|-
+|
+OMP_AN:7593
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XCE8 flhD
+|
+|-
+|
+OMP_AN:7594
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0AF07 motB
+|
+|-
+|
+OMP_AN:7595
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DI68 stx2
+|
+|-
+|
+OMP_AN:7596
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XAY7 lsrA
+|
+|-
+|
+OMP_AN:7597
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8X902 luxS
+|
+|-
+|
+OMP_AN:7598
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+rrsG
+|
+|-
+|
+OMP_AN:7599
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DH26 stx1
+|
+|-
+|
+OMP_AN:7600
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7591
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q93U24 csgA
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7601
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7591
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q93U24 csgA
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7602
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7591
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q93U24 csgA
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7603
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7592
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0ABK8 csgB
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7604
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7592
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0ABK8 csgB
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7605
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7592
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0ABK8 csgB
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7606
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7593
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XCE8 flhD
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7607
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7593
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XCE8 flhD
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7608
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7593
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XCE8 flhD
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7609
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7594
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0AF07 motB
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7610
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7594
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0AF07 motB
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7611
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7594
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:P0AF07 motB
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7612
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7595
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DI68 stx2
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7613
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7596
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XAY7 lsrA
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7614
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7596
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XAY7 lsrA
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7615
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7595
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DI68 stx2
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7616
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7595
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DI68 stx2
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7617
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7596
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8XAY7 lsrA
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7618
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7597
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8X902 luxS
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7619
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7597
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8X902 luxS
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7620
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7597
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q8X902 luxS
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7621
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7598
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+rrsG
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7622
+|
+|
+OMP:0000267
+|
+increased gene expression
+|
+Relative to: OMP_AN:7598
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+rrsG
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7623
+|
+NOT
+|
+OMP:0007080
+|
+altered gene expression
+|
+Relative to: OMP_AN:7598
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+rrsG
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7624
+|
+|
+OMP:0007080
+|
+altered gene expression
+|
+Relative to: OMP_AN:7599
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Coumarin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Coumarin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DH26 stx1
+CHEBI:28794 Coumarin
+|
+|-
+|
+OMP_AN:7625
+|
+|
+OMP:0007080
+|
+altered gene expression
+|
+Relative to: OMP_AN:7599
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Umbelliferone (50 ug/mL)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Umbelliferone (50 ug/mL)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DH26 stx1
+CHEBI:27510 Umbelliferone
+|
+|-
+|
+OMP_AN:7626
+|
+|
+OMP:0007080
+|
+altered gene expression
+|
+Relative to: OMP_AN:7599
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Esculetin (50 ug/mL)?
+|
+*temperature:37C
+*medium:Esculetin (50 ug/mL)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:24837471
+|
+UniProtKB:Q7DH26 stx1
+CHEBI:490095 Esculetin
+|
+|-
+|
+OMP_AN:7627
+|
+|
+OMP:0000176
+|
+biofilm phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7628
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7627
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= Acacia honey (0.1 %)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:>= Acacia honey (0.1 %)
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7629
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7627
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+other:>= Polyfloral honey (0.1 %)?
+|
+*other:>= Polyfloral honey (0.1 %)
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7630
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7627
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= Clover honey (0.1 %)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:>= Clover honey (0.1 %)
+*medium:LB medium
+|
+ECO:0000181
+|
+in vitro assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7631
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q93U24 csgA
+|
+|-
+|
+OMP_AN:7632
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:P43261 eae
+|
+|-
+|
+OMP_AN:7633
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB80 espA
+|
+|-
+|
+OMP_AN:7634
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB81 espD
+|
+|-
+|
+OMP_AN:7635
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:O85645 ler
+|
+|-
+|
+OMP_AN:7636
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XAY9 lsrB
+|
+|-
+|
+OMP_AN:7637
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XA21 lsrF
+|
+|-
+|
+OMP_AN:7638
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XAY7 lsrA
+|
+|-
+|
+OMP_AN:7639
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7631
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q93U24 csgA
+|
+|-
+|
+OMP_AN:7640
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7632
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:P43261 eae
+|
+|-
+|
+OMP_AN:7641
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7633
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB80 espA
+|
+|-
+|
+OMP_AN:7642
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7634
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB81 espD
+|
+|-
+|
+OMP_AN:7643
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7635
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:O85645 ler
+|
+|-
+|
+OMP_AN:7644
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7636
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XAY9 lsrB
+|
+|-
+|
+OMP_AN:7645
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7637
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Acacia honey (0.5%)?
+|
+*temperature:37C
+*medium:Acacia honey (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XA21 lsrF
+|
+|-
+|
+OMP_AN:7654
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7631
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Glucose (0.5%)?
+|
+*temperature:37C
+*medium:Glucose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q93U24 csgA
+CHEBI:17234 glucose
+|
+|-
+|
+OMP_AN:7655
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7631
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Fructose (0.5%)?
+|
+*temperature:37C
+*medium:Fructose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q93U24 csgA
+CHEBI:28757 fructose
+|
+|-
+|
+OMP_AN:7656
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7631
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Sucrose (0.5%)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Sucrose (0.5%)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q93U24 csgA
+CHEBI:17992 sucrose
+|
+|-
+|
+OMP_AN:7657
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7633
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Glucose (0.5%)?
+|
+*temperature:37C
+*medium:Glucose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB80 espA
+CHEBI:17234 glucose
+|
+|-
+|
+OMP_AN:7658
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7633
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Fructose (0.5%)?
+|
+*temperature:37C
+*medium:Fructose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB80 espA
+CHEBI:28757 fructose
+|
+|-
+|
+OMP_AN:7659
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7633
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Sucrose (0.5%)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Sucrose (0.5%)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB80 espA
+CHEBI:17992 sucrose
+|
+|-
+|
+OMP_AN:7660
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7634
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Glucose (0.5%)?
+|
+*temperature:37C
+*medium:Glucose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB81 espD
+CHEBI:17234 glucose
+|
+|-
+|
+OMP_AN:7661
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7634
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Fructose (0.5%)?
+|
+*temperature:37C
+*medium:Fructose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB81 espD
+CHEBI:28757 fructose
+|
+|-
+|
+OMP_AN:7662
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7634
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Sucrose (0.5%)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Sucrose (0.5%)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q7DB81 espD
+CHEBI:17992 sucrose
+|
+|-
+|
+OMP_AN:7663
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7637
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Glucose (0.5%)?
+|
+*temperature:37C
+*medium:Glucose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XA21 lsrF
+CHEBI:17234 glucose
+|
+|-
+|
+OMP_AN:7664
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7637
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Fructose (0.5%)?
+|
+*temperature:37C
+*medium:Fructose (0.5%)
+*medium:LB medium
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XA21 lsrF
+CHEBI:28757 fructose
+|
+|-
+|
+OMP_AN:7665
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7637
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Sucrose (0.5%)?
+|
+*temperature:37C
+*medium:LB medium
+*medium:Sucrose (0.5%)
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:22047137
+|
+UniProtKB:Q8XA21 lsrF
+CHEBI:17992 sucrose
+|
+|-
+|
+OMP_AN:7666
+|
+|
+OMP:0000176
+|
+biofilm phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7667
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Honey (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:Honey (0.5%)
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7668
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Glucose (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:Glucose (0.5%)
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:17234 glucose
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7669
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Fructose (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:Fructose (0.5%)
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:28757 fructose
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7670
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Sucrose (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+*medium:Sucrose (0.5%)
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:17992 sucrose
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7671
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Lactose (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+*medium:Lactose (0.5%)
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:17716 lactose
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7672
+|
+|
+OMP:0007026
+|
+decreased biofilm formation
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Galactose (0.5%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:Galactose (0.5%)
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:28260 galactose
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7673
+|
+NOT
+|
+OMP:0005129
+|
+altered biofilm
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:Methylglyoxal (0.001%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:LB medium
+*medium:Methylglyoxal (0.001%)
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+|
+CHEBI:17158 methylglyoxal
+|
+Crystal violet biofilm assay
+|-
+|
+OMP_AN:7674
+|
+NOT
+|
+OMP:0005129
+|
+altered biofilm
+|
+Relative to: OMP_AN:7666
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:H2O2 (0.00005%)?
+|
+*other:96-well plate
+*temperature:37C
+*medium:H2O2 (0.00005%)
+*medium:LB medium
+|
+ECO:0000182
+|
+in vitro culture assay evidence
+|
+PMID:22047137
+|
+CHEBI:16240 H2O2
+|
+Crystal violet biofilm assay
+|- class="tableEdit_footer"
+|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
+|}
+<noinclude>
+<!-- OMP category tags -->
+</noinclude>
+<!--box uid=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5--></protect>